1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGAGGCAGCAGCACACGGCACACACAAAGAACAAAAGACAAAGACAGAGAGAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTgtctgtgatcttttccgaattttttttttgtattttcgatttcagaaagtgttcttttgcataaattgttgtctttttccatttggggtgcgttggattgacatggatcag
species | Glycine max |
transcript | GLYMA08G01940.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCT G--AT--G-ATGA-G--TGATTACAAGGTGGAGACGGTCAACGATGGCATGEST: gi|193681729|gb|FK620903.1|FK620903
genomic: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTgtctgtgatc ... catggatcagGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATG
EST: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCT GTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGEST: gi|193562259|gb|FK521268.1|FK521268
genomic: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTgtctgtgatc ... catggatcagGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATG
EST: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCT GTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGEST: gi|298198506|gb|HO040045.1|HO040045
genomic: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTgtctgtgatc ... catggatcagGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATG
EST: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCT GTCATCAGGATGATGAGGGATTACAAGGTGGAGACGGTCAACGATGGCATGEST: gi|298182580|gb|HO031315.1|HO031315
genomic: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTgtctgtgatc ... catggatcagGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATG
EST: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCT GTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGEST: gi|192324802|gb|FK016873.1|FK016873
genomic: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTgtctgtgatc ... catggatcagGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATG
EST: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCT G--AT--G-ATGA-G--TGATTACAAGGTGGAGACGGTCAACGATGGCATG
genomic: GAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTgtctgtgatc ... catggatcagGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGCAGCAGCACACGGCACACACAAAGAACAAAAGACAAAGACAGAGAGAAACAATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTgtctgtgatcttttccgaattttttttttgtattttcgatttcagaaagtgttcttttgcataaattgttgtctttttccatttggggtgcgttggattgacatggatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC