1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACAGTGCCCCTCACAAACGCCCTCCCTCGTTATCCAAGAAGCTCCAAAACGGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGAgtaccttcttcttctctatctcatttcatctcttcattccttttcgctttcctctgctttcaaccatacaccgatccgtacaaatccaactaaaccgttt...
species | Glycine max |
transcript | GLYMA08G00560.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGA GTTTGATGGGGGAGAAAGAACAGTTAAGAAGCTTCGGTTGTCGAAAGCCCTEST: gi|192295459|gb|FG987073.1|FG987073
genomic: GGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGAgtaccttctt ... aattatttagGTTTGATGGGGGAGAAAGAACAGTTAAGAAGCTTCGGTTGTCGAAAGCCCT
EST: GGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGA GTTTGATGGGGGAGAAAGAACAGTTAAGAAGCTTCGGTTGTCGAAAGCCCTEST: gi|254333299|gb|GR850549.1|GR850549
genomic: GGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGAgtaccttctt ... aattatttagGTTTGATGGGGGAGAAAGAACAGTTAAGAAGCTTCGGTTGTCGAAAGCCCT
EST: GGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGA GTTTGATGGGGGAGAAAGAACAGTTAAGAAGCTTCGGTTGTCGAAAGCCCTEST: gi|193669736|gb|FK614114.1|FK614114
genomic: GGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGAgtaccttctt ... aattatttagGTTTGATGGGGGAGAAAGAACAGTTAAGAAGCTTCGGTTGTCGAAAGCCCT
EST: GGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGA GTTTGATGGGGGANAAAGAACAGTTAAGA-GCTTCGGTTGTCGAAAGCCCT
genomic: GGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGAgtaccttctt ... aattatttagGTTTGATGGGGGAGAAAGAACAGTTAAGAAGCTTCGGTTGTCGAAAGCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGTGCCCCTCACAAACGCCCTCCCTCGTTATCCAAGAAGCTCCAAAACGGAAGCCTTAGCGAACCTCCCAGCAAGGCTTCTTCTCCGCCACCTCAAGAgtaccttcttcttctctatctcatttcatctcttcattccttttcgctttcctctgctttcaaccatacaccgatccgtacaaatccaactaaaccgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG