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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTTATTCGTGATTTCATTCCTTCTGGAATTGCCTTCCTATTGAAGGGGGAGTATGATATTGTTCGGAATTTTATCCTTTATACACTTCAGTTGCAGgtaatttcttggaatcttgatcttataacacaacatgtgccggtaacagcaaaatttgatacaacttggttacttacatgccttagatatatatattttt...

Basic information

species Glycine max
transcript GLYMA05G31920.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31920.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0074g00720.t01 (Vitis vinifera), 5'ss of exon 3
GGTCTTTATTCGTGATTTCATTCCTTCTGGAATTGCCTTCCTATTGAAGGGGGAGTATGATATTGTTCGGAATTTTATCCTTTATACACTTCAGTTGCAGgtaatttcttggaatcttgatcttataacacaacatgtgccggtaacagcaaaatttg-atacaacttggttacttacatgccttagatat---atatattttt-
 |||||||| ||||| || || |||||||| ||||| ||||| |||||||| || |||||||||||||| || || |||||| | ||||||||||||||||||||||    |  |  ||||  | |     | ||| |     || || | || | ||   | || ||  |  | ||  |   ||   |||   || ||||| | 
AGTCTTTATCCGTGACTTTATACCTTCTGGTATTGCTTTCCTTTTGAAGGGAGAATATGATATTGTTCGAAACTTCATCCTTCACACACTTCAGTTGCAGgtaatttaacag--ttctgattatgttg---accatttaagtttagcaaccaattgtgtgcagaatttcttgtcatagttaatttttttattccatttatttatt