1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAAGCTCTTGTACCCTAAACTCGCTTCCAAACTCAGCGACGACTCTCTCTTCCTCTCCCAGCTTCCCCTCAACTCCTCTCTCAAGATGACCATGATCGGgtacgccatgccactacgctctcgtttcgtttcacacttttattattagggttttctttcattacatttctcacgaataattaatgaatgaaatttcag
species | Glycine max |
transcript | GLYMA05G30160.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATGACCATGATCGG TACTACTGAAGAGGACTTGCTCGTGGATCCCGTGGAGTCCCCTGAGATTCTEST: gi|151393341|gb|EV263216.1|EV263216
genomic: ATGACCATGATCGGgtacgccatg ... gaaatttcagTACTACTGAAGAGGACTTGCTCGTGGATCCCGTGGAGTCCCCTGAGATCCT
EST: TTCCTCTCCCAGCTTCCCCTCAACTCCTCTCTCAAGATGACCATGATCGG TACTACTGAAGAGGACTTGCTCGTGGATCCCGTGGAGTCCCCTGAGATCCTEST: gi|298197574|gb|HO045053.1|HO045053
genomic: TTCCTCTCCCAGCTTCCCCTCAACTCCTCTCTCAAGATGACCATGATCGGgtacgccatg ... gaaatttcagTACTACTGAAGAGGACTTGCTCGTGGATCCCGTGGAGTCCCCTGAGATCCT
EST: TTCCTCTCCCAGCTTCCCCTCAACTCCTCTCTCAAGATGACCATGATCGG TACTACTGAAGAGGACTTGCTCGTGGATCCCGTGGAGTCCCCT
genomic: TTCCTCTCCCAGCTTCCCCTCAACTCCTCTCTCAAGATGACCATGATCGGgtacgccatg ... gaaatttcagTACTACTGAAGAGGACTTGCTCGTGGATCCCGTGGAGTCCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGCTCTTGTACCCTAAACTCGCTTCCAAACTCAGCGACGACTCTCTCTTCCTCTCCCAGCTTCCCCTCAACTCCTCTCTCAAGATGACCATGATCGGgtacgccatgccactacgctctcgtttcgtttcacacttttattattagggttttctttcattacatttctcacgaataattaatgaatgaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG