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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAAAGTGGACCGGAGATGCCGGTTGCCGCTTCCGCCATTTACTTCCTCAACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtaatccagtttcttccttttttctctctctcattcgcgttttcaccgacacatagtgcatgtttagacgattgttgacagcattgattttgaagtgata...

Basic information

species Glycine max
transcript GLYMA05G23670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 1
lower sequence: EFJ22278 (Selaginella moellendorffii), 5'ss of exon 1
GGTAAAGTGGACCGGAGATGCCGGTTGCCGCTTCCGCCATTTACTTCCTCAACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtaa-------tccagtttcttccttt-tttctctctctcattc----gcgtttt-------caccgacacatagtgcatg-----tttagacgattgttgac--agcattgattttgaagtgata------------------------------------------
| |   | | | ||   |||||||| || |||||||| || |||||||||||||| || || || || |||||||| ||||||||  | |||||||||||||||        ||| ||   |||    ||||   | ||   ||    | ||  |       ||| |   |||| | |  |     ||  | ||  ||  | |  ||       |  | ||||| |                                          
GTTTGGGCGCATCGATCATGCCGGTCGCGGCTTCCGCGATCTACTTCCTCAACCTGCGAGGGGATGTGCTCATCAATCGCCTCTACAGAGACGATGTCGGgtaagaatcctcccaattctctccggcatttcgagcgctagatctagggtgtcctggggcagcacggggtcatatttcgcgagcttttgggtcggctggggcccgagatccagctccggagtgagaatttagggctcttagagtgactggctacgtttaattttgcag

upper sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 1
lower sequence: EFJ25669 (Selaginella moellendorffii), 5'ss of exon 1
GGTAAAGTGGACCGGAGATGCCGGTTGCCGCTTCCGCCATTTACTTCCTCAACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtaa-------tccagtttcttccttt-tttctctctctcattc--gcgttttcaccgaca-catagtg-catgtttagacgattgttga-cagcattgattttgaagtgata-------------------------------------------------------
| |   | | | ||   |||||||| || |||||||| || |||||||||||||| || || || || |||||||| ||||||||  | |||||||||||||||        ||| ||   |||    ||||   | ||   ||  | || | |   | || ||  | | ||| ||| |     | |||    |  | |     ||  |                                                           
GTTTGGGCGCATCGATCATGCCGGTCGCGGCTTCCGCGATCTACTTCCTCAACCTGCGAGGGGATGTGCTCATCAATCGCCTCTACAGGGACGATGTCGGgtaagaatcctcccaattctctccggcatttcgagcgctagatctagggtgtcctggggcagcacggggtcatatttcgcgagcttttgggtcggctcgggcccgagatccagctccggagtgagaatttagggctcttagagtgactggctacgtttaattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15202217|gb|BI425285.1|BI425285
EST:     AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGG                         GGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT
genomic: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtaatccagt ... gctattgcagGGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT
EST: gi|21887371|gb|BQ740584.1|BQ740584
EST:     AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGG                         GGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT
genomic: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtaatccagt ... gctattgcagGGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT
EST: gi|24136425|gb|BU926935.1|BU926935
EST:     AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGG                         GGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT
genomic: AACCTCCGCGGCGACGTTCTCATCAACCGCCTCTATCGCGACGATGTCGGgtaatccagt ... gctattgcagGGGAAATATGGTGGATGCTTTTAGGACGCATATTATGCAAACGAAGGAGCT