Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGAGGACTGGTGAACACTCACTCGCCACTGCTCACGAACCGTATAAACCCTAAAACCTTGATTTTTCCCAATCCATTCCACGCACAATATGGCTTCAGgtacgcgcttgttgttgttgttgattaatgcatttggtgttatgatgatgaaactaattgattgattgactgtgtag

Basic information

species Glycine max
transcript GLYMA05G14170.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198332|gb|HO039871.1|HO039871
EST:     CCTAAAACCTTGATTTTTCCCAATCCATTCCACGCACAATATGGCTTCAG                         ATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGG
genomic: CCTAAAACCTTGATTTTTCCCAATCCATTCCACGCACAATATGGCTTCAGgtacgcgctt ... gactgtgtagATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGG
EST: gi|17518821|gb|BM187863.1|BM187863
EST:     CCTAAAACCTTGATTTTTCCCAATCCATTCCACGCACAATATGGCTTCAG                         ATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGG
genomic: CCTAAAACCTTGATTTTTCCCAATCCATTCCACGCACAATATGGCTTCAGgtacgcgctt ... gactgtgtagATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGG
EST: gi|298194816|gb|HO043288.1|HO043288
EST:     CCTAAAACCTTGATTTTTCCCAATCCATTCCACGCACAATATGGCTTCAG                         ATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGG
genomic: CCTAAAACCTTGATTTTTCCCAATCCATTCCACGCACAATATGGCTTCAGgtacgcgctt ... gactgtgtagATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGG
EST: gi|298169723|gb|HO021083.1|HO021083
EST:     CCTAAAACCTTGATTTTTCCCAATCCATTCCACGCACAATATGGCTTCAG                         ATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGG
genomic: CCTAAAACCTTGATTTTTCCCAATCCATTCCACGCACAATATGGCTTCAGgtacgcgctt ... gactgtgtagATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGG