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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATTGAGCAATCAAAAAGAATCTTGGGAGATCAGGGAGGTCATCGTCGTCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAGgcacggtccccccccctttccatttttttttttgtttttaattgaaagagggacgaggcgaaagtgaagaatgaagaggaatgagaaatagctaataagtgttaattggttgagcag

Basic information

species Glycine max
transcript GLYMA04G11160.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193462274|gb|FK425471.1|FK425471
EST:     TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCGCCCAGGAACAG                         GGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
genomic: TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAGgcacggtccc ... ggttgagcagGGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
EST: gi|18848808|gb|BM567920.1|BM567920
EST:     TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAG                         GGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
genomic: TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAGgcacggtccc ... ggttgagcagGGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
EST: gi|209713150|gb|BW681684.1|BW681684
EST:     TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAG                         GGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
genomic: TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAGgcacggtccc ... ggttgagcagGGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
EST: gi|207773715|gb|GD746183.1|GD746183
EST:     TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAG                         GGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
genomic: TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAGgcacggtccc ... ggttgagcagGGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
EST: gi|151400095|gb|EV269909.1|EV269909
EST:     TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAG                         GGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
genomic: TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAGgcacggtccc ... ggttgagcagGGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
EST: gi|192324392|gb|FK015743.1|FK015743
EST:     TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAG                         GGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
genomic: TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAGgcacggtccc ... ggttgagcagGGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
EST: gi|17022986|gb|BM094020.1|BM094020
EST:     TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAG                         GGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA
genomic: TCATTTCTGCGCTCAAGATTAACATAACGACCTCGCGCACCCAGGAACAGgcacggtccc ... ggttgagcagGGTATTGTGTTGTGTAGCTGAAGGACATGGAGAGAAGCAATCCGGTGAGGA