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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGCGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttctttcttcctttctttctttgccctttctcttctcaattataacggaaagttagttaaaatcacacacacacacacacacacacatatatat...

Basic information

species Glycine max
transcript GLYMA04G02540.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G02540.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 5'ss of exon 1
GATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGCGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttctttcttcctttctttctttgccctttctcttctcaattataacggaaagttagttaaaatcacacacacacacacacacacacatatatat--
|||||| ||||| |||||||| ||||||||||||||||| |||||||| |||||||| |||||| || | || |||||||||  |||||| || ||||| ||   | |  |||||| | |  |||||    ||| |||    || ||           |    |    ||     |     |        |  ||| | |  
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACCGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACTgtgcgtattcttcttcttcttcttcttc-ttcttcctccaaacatttccttttcttcttcttcttctttcttttgcttcttctttttttaat-tatttttga

upper sequence: GLYMA04G02540.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G803949_T01 (Zea mays), 5'ss of exon 1
GATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGCGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttctttcttcctttctttctttgccctttctcttctcaattataacggaaagtt-agttaaaatcacacacacacacacacacacacatatatat
|||||| ||||| |||||||| ||||||||||| ||||| |||||||| |||||||| |||||| || | ||||||||||||  |||||| || ||||| ||      ||      ||  |  | |      ||| |  |        |  | | |  || | ||       |   |     |   |     |        
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATTTCCTACACCTCCAACACCTTCCCCACCgtacgcccctcctcctctgacggtttcaatttttttttctggggggagtccccggattttgaattgcggcggcggtcttgatcgatctggggcgcgctgg-

upper sequence: GLYMA04G02540.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G846811_T01 (Zea mays), 5'ss of exon 1
GATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGCGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttctttcttcct-ttctttctttgcc----------ctttctcttctcaattataacggaaagttagttaaaatcacacacacacacacacacacacatatatat
|||||| ||||| |||||||| ||||||||||| ||||| |||||||| |||||||| |||||| || | || |||||||||  |||||| || ||||| ||    | ||| || |   || || ||  ||           | || | || |      |  |||   |  | ||  |||  |     |   |     |            
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACCgtacgctccttcctcctcattgttgctccgctggagaggtttcatttttttttggggggtcccggtccgggattttgaattgcgacggcgttcttgatcg-----------

upper sequence: GLYMA04G02540.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g14670.t01 (Vitis vinifera), 5'ss of exon 1
GATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGCGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttctttcttcct--ttct----ttctttgccctttctcttctcaattataacggaaagttagttaaaatcacacacacacacacacacacacatatatat
|||||| || || ||||| || |||||||| || ||||| || || |||||||||||||||||| || ||||||||||||||||||||||||| || ||||||  || |    || ||  ||||    || | |  | ||  |  |   ||  ||   || ||   |     || || |   | |  | |  | | | |       
GATGAGCGCCTCTAGGTTTATAAAGTGCGTTACGGTCGGTGATGGTGCTGTCGGCAAAACCTGCATGCTGATTTCCTACACCAGCAACACTTTCCCTACGgttagttccccattttctgattctaggtttttgtatctttggttcttggaaagatcgagggaaagcaagaggaaccaaaagaaaatgctctaaaagaaaa------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173197|gb|HO020181.1|HO020181
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
EST: gi|21255617|gb|BQ452505.1|BQ452505
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
EST: gi|16349155|gb|BI974750.1|BI974750
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
EST: gi|207759200|gb|GD734371.1|GD734371
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
EST: gi|20449761|gb|BQ253885.1|BQ253885
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
EST: gi|16347027|gb|BI972622.1|BI972622
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
EST: gi|298171524|gb|HO016556.1|HO016556
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTTCAGCGCTAATGTTGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
EST: gi|13481472|gb|BG510815.1|BG510815
EST:     TCGGCAAAACCTGCTTGGTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTT
EST: gi|209720783|gb|BW657757.1|BW657757
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
EST: gi|208091184|gb|GD890937.1|GD890937
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... ttgataacagGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGAT