1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGCCGCCATTCGGGCCCTGGCCGCCGTCATAAGGTCCAGCAAGGCTACCACCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCTCAAGgtattcactctattgtttcttcattcatttccaacgctctctctctctctctctctctgacacattcttcttcattgctttgcattgcag
species | Glycine max |
transcript | GLYMA03G42430.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCTCAAG TCTTGGGATACCACCTCTATCTCTCTGACAGCCGGCTGTGATCTCTTTATGEST: gi|298196724|gb|HO041467.1|HO041467
genomic: CCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCTCAAGgtattcactc ... tgcattgcagTCTTGGGATACCACCTCTATCTCTCTGACAGCCGGCTGTGATCTCTTTATG
EST: CCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCCCAAG TCTTGGGATACCACCTCTATCTCTCTGACAGCCGGCTGTGATCTCTTTATGEST: gi|298166065|gb|HO009036.1|HO009036
genomic: CCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCTCAAGgtattcactc ... tgcattgcagTCTTGGGATACCACCTCTATCTCTCTGACAGCCGGCTGTGATCTCTTTATG
EST: CCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCTCAAG TCTTGGGATACCACCTCTATCTCTCTGACAGCCGGCTGTGATCTCTTTATGEST: gi|298189777|gb|HO038180.1|HO038180
genomic: CCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCTCAAGgtattcactc ... tgcattgcagTCTTGGGATACCACCTCTATCTCTCTGACAGCCGGCTGTGATCTCTTTATG
EST: CCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCTCAAG TCTTGGGATACCACCTCTATCTCTCTGACAGCCGGCTGTGATCTCTTTATG
genomic: CCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCTCAAGgtattcactc ... tgcattgcagTCTTGGGATACCACCTCTATCTCTCTGACAGCCGGCTGTGATCTCTTTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCATTCGGGCCCTGGCCGCCGTCATAAGGTCCAGCAAGGCTACCACCATGATGCAGCTCGAGATTGAGCTCAAGAAGGCCTCCGATTTTCTCAAGgtattcactctattgtttcttcattcatttccaacgctctctctctctctctctctctgacacattcttcttcattgctttgcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG