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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATAGAGCGCAATCATAGTCCCTCTTTCTTCTCTTCCGCCATCGTTTTCTTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacctcttcttctccaaacctcattctcttcaaacgctaacgtttaatttttaagcggagtgggattccactttccccgagtgatcatagaatccgaagctctagggttaccgttactgttaaattaacctaacattgtatattaattttacctttttaaccccattctccgtttactccttgcag

Basic information

species Glycine max
transcript GLYMA03G37170.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181980|gb|HO026155.1|HO026155
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|4306331|gb|AI443889.1|AI443889
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298177576|gb|HO027243.1|HO027243
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|15285536|gb|BI469427.1|BI469427
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|20449577|gb|BQ253701.1|BQ253701
EST:     GACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: GACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298188838|gb|HO035531.1|HO035531
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACGTG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298167205|gb|HO010644.1|HO010644
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         TTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|15287452|gb|BI471343.1|BI471343
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|20449634|gb|BQ253758.1|BQ253758
EST:     GACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: GACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|6227965|gb|AW156627.1|AW156627
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298165378|gb|HO011427.1|HO011427
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|12773301|gb|BG238228.1|BG238228
EST:     GCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: GCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298181583|gb|HO025758.1|HO025758
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|208242573|gb|GE043363.1|GE043363
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCC
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCC
EST: gi|298177163|gb|HO027058.1|HO027058
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGATTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298169719|gb|HO021079.1|HO021079
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298190031|gb|HO032152.1|HO032152
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298180399|gb|HO025600.1|HO025600
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|298195412|gb|HO039243.1|HO039243
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|6724523|gb|AW308922.1|AW308922
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|24206235|gb|BU965488.1|BU965488
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG