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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCCAACGCCCTCGTCCCCGCCGCTCCCGCCGTTTGCCTCCTTCGCTTCGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctcttctcttctctctgtattatcacattacgccgtcgtttcatagactaattaccgtttgtttagcctaatttcttcgctcaacttttaatcga...

Basic information

species Glycine max
transcript GLYMA02G46620.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727058|gb|BU761545.1|BU761545
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|17153736|gb|BM143669.1|BM143669
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|31468894|gb|CD410922.1|CD410922
EST:     CGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGCTTTTAAAGGATCCTTCGTAGAAGCAG
genomic: CGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|26047850|gb|CA784505.1|CA784505
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|298181833|gb|HO026008.1|HO026008
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|298174609|gb|HO017832.1|HO017832
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|9898882|gb|BE607850.1|BE607850
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|298184523|gb|HO029736.1|HO029736
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|31311953|gb|CD397156.1|CD397156
EST:     CGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|298178521|gb|HO024256.1|HO024256
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGGAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|298181875|gb|HO026050.1|HO026050
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTATAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|7925046|gb|AW831072.1|AW831072
EST:     CGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|6071305|gb|AW100692.1|AW100692
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|24135852|gb|BU926362.1|BU926362
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|298173707|gb|HO017043.1|HO017043
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGTGTTTTAAAGGATCCTTTGTAGAAGCA
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAG-GTTTTAAAGGATCCTTTGTAGAAGCA
EST: gi|15337011|gb|BI497667.1|BI497667
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
EST: gi|18041339|gb|BM309633.1|BM309633
EST:     CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACG                         GTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG
genomic: CGCCACCGACTCCGCCGGCGGCGCTCTCATGGGCTCCGTCTTTGGATACGgttctctctt ... tgtgtttcagGTGCTGGATTGTTTAAGAAGAAAGGTTTTAAAGGATCCTTTGTAGAAGCAG