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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATATAATACCTCATCTTTCTCTTTCAATTTCTCTCTTCGCTTTTTTTTGATTCACACACAATGGGTCTCTGGGATTCCTTCCTCAATTGGCTCCGCAGgtaaacctcttatccacaatactactatttgttcattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatt...

Basic information

species Glycine max
transcript GLYMA02G41170.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41170.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S6_409V6.2 (Physcomitrella patens), 5'ss of exon 2
--ACATATAATACCTCATCTTTCTCTTTCAATTTCTCTCTTCGCTTTTTTTTGATTCACACACAATGGGTCTCTGGGATTCCTTCCTCAATTGGCTCCGCAGgtaaacctcttatccacaatactactatttgttcattatatatatatatatatatatatatatatatatatatatatatata-tatatatatatatatatt-
   |   |  |   |     ||  |||   ||||    |   |   |       | |  | |  |||||  | |||||||| |||||||||||||||||||||||     | | |   ||||   | |  || |   ||  ||   | |   || || | | |   |   | |     | |  | | |||     ||     | 
GGTCTGTTTTTGAATTGGGCTTTACTTCGGATTTGGGGCA--GAAGTCGCGGACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacct-ttttcaatttcattgcttctggtttggatcc-tctgactaaatctgtttgagttcgttttcgggttttgactttatgaggctaccggctg

upper sequence: GLYMA02G41170.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S6_409V6.3 (Physcomitrella patens), 5'ss of exon 2
ACATATAATACCTCATCTTTCTCTTTCAATTTCTCTCTTCGCTTTTTTTTGATT-CACACACAATGGGTCTCTGGGATTCCTTCCTCAATTGGCTCCGCAGgtaaacctcttatccacaatactactatttgttcattatatatatatatatatatatatatatatatatatatatatatata-tatatatatatatatatt-
                                             |    || | |  | |  |||||  | |||||||| |||||||||||||||||||||||     | | |   ||||   | |  || |   ||  ||   | |   || || | | |   |   | |     | |  | | |||     ||     | 
------------------------------------------AAGTCGCGGACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacct-ttttcaatttcattgcttctggtttggatcc-tctgactaaatctgtttgagttcgttttcgggttttgactttatgaggctaccggctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393791|gb|EV263666.1|EV263666
EST:     GATTCACACACAATGGGTCTCTGGGATTCCTTCCTCAATTGGCTCCGCAG                         CTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGC
genomic: GATTCACACACAATGGGTCTCTGGGATTCCTTCCTCAATTGGCTCCGCAGgtaaacctct ... gttgtgtcagCTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGC
EST: gi|8826727|gb|BE210457.1|BE210457
EST:     GATTCACACACAATGGGTCTCTGGGATTCCTTCCTCAATTGGCTCCGCAG                         CTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGC
genomic: GATTCACACACAATGGGTCTCTGGGATTCCTTCCTCAATTGGCTCCGCAGgtaaacctct ... gttgtgtcagCTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGC