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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGCTTGCTGCAATCGGATTCACTCCGCAGCTGCAGAGCTCAAAACCCTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatctgttcttattctcgctttctgtaaattctaaaaccttcttattctttttctcatctcatcgttgaatcttccatcattgttcgcag

Basic information

species Glycine max
transcript GLYMA02G40660.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714126|gb|BW679453.1|BW679453
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|298193161|gb|HO033595.1|HO033595
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|6667682|gb|AW279133.1|AW279133
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|12773993|gb|BG238920.1|BG238920
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGG-CGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|58025014|gb|CX711755.1|CX711755
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|151396481|gb|EV266358.1|EV266358
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|193309857|gb|FK274999.1|FK274999
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|151403147|gb|EV272957.1|EV272957
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|192294571|gb|FG986420.1|FG986420
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|298176835|gb|HO023308.1|HO023308
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|19346572|gb|BM891452.1|BM891452
EST:     AGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: AGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|18712547|gb|BM522657.1|BM522657
EST:     GAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|298184997|gb|HO030210.1|HO030210
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|254334360|gb|GR844145.1|GR844145
EST:     GGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|19053086|gb|BM731753.1|BM731753
EST:     AGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: AGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|192294353|gb|FG987282.1|FG987282
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|207713156|gb|GD697140.1|GD697140
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCNCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|6964412|gb|AW433105.1|AW433105
EST:     AGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: AGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|298176415|gb|HO026650.1|HO026650
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCGCGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|209714125|gb|BW679452.1|BW679452
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|7233278|gb|AW568626.1|AW568626
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|298170159|gb|HO018783.1|HO018783
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGTAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|254334359|gb|GR844144.1|GR844144
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|13790626|gb|BG653217.1|BG653217
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|254337349|gb|GR845132.1|GR845132
EST:     GAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|208245336|gb|GE041660.1|GE041660
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|12774383|gb|BG239310.1|BG239310
EST:     GAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|18711106|gb|BM522560.1|BM522560
EST:     GAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|7284083|gb|AW596682.1|AW596682
EST:     GTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: GTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
EST: gi|193397698|gb|FK362374.1|FK362374
EST:     CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC
genomic: CTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatc ... ttgttcgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCACGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTGCTTGCTGCAATCGGATTCACTCCGCAGCTGCAGAGCTCAAAACCCTAGAGAGGAGGAAGAGAGAGCGTGCAAGTTCCGGCCACCACCGACCATGgttcgagatctgttcttattctcgctttctgtaaattctaaaaccttcttattctttttctcatctcatcgttgaatcttccatcattgttcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA