Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCCTCGCCTTGCGTTTTGTTTCCTCTACCAGATCCTACTCCTCTTCCTTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgtcttccttaattaatttcgctttctgccatttcctctttttttttttttcacttcttatctgattgtgttgtgtttctgaactactgttatag

Basic information

species Glycine max
transcript GLYMA02G01920.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15589604|gb|BI674220.1|BI674220
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
EST: gi|193685308|gb|FK625782.1|FK625782
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
EST: gi|19347447|gb|BM892327.1|BM892327
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
EST: gi|192310921|gb|FG998897.1|FG998897
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
EST: gi|298178427|gb|HO024162.1|HO024162
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
EST: gi|192322683|gb|FK015020.1|FK015020
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
EST: gi|192310776|gb|FK000290.1|FK000290
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
EST: gi|16281620|gb|BI944581.1|BI944581
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
EST: gi|209714881|gb|BW682046.1|BW682046
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
EST: gi|209717303|gb|BW659018.1|BW659018
EST:     TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAA                         ATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG
genomic: TTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgt ... actgttatagATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTCCTCGCCTTGCGTTTTGTTTCCTCTACCAGATCCTACTCCTCTTCCTTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAgttcgttcgtcttccttaattaatttcgctttctgccatttcctctttttttttttttcacttcttatctgattgtgttgtgtttctgaactactgttatag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG