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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTCACTTACGAGGATCTGCAACCTGATATTGAGCGCATTGCAAATGGTGACCGCTCTCCCATCTTGTGCGCTCACCCAATCTCCGAGTTTCTCACCAGgtacgatttcttaatatttcaggcgtatagtatgaatgaatgtcctttgtattttactgatcgtgcttgaatgaatgaattaaaattacag

Basic information

species Glycine max
transcript GLYMA01G39780.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39780.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G068701_T01 (Zea mays), 5'ss of exon 1
TCGTCACTTACGAGGATCTGCAACCTGATATTGAGCGCATTGCAAATGGTGACCGCTCTCCCATCTTGTGCGCTCACCCAATCTCCGAGTTTCTCACCAGgtacga----tttcttaatatttcaggcgtatagtatgaatgaa-tgtc--ctttgtattttactgatcgtgcttgaatgaatgaattaaaattacag
||||||| |||||||| ||||| || || ||  ||||||| || || || |||||||| |||||| | | ||| || || ||||||||||| |||||||||||||     ||| || ||   |  ||  |   |  ||  | |  |||   | | |  || || | || |   | ||  |  |  |||   | |  ||
TCGTCACCTACGAGGACCTGCAGCCCGACATCCAGCGCATCGCCAACGGGGACCGCTCGCCCATCCTCTCCGCGCATCCCATCTCCGAGTTCCTCACCAGgtacgcgcattttttttattcattgggatttctgcctgtgttaggtgttgacgtcgccttgta-taattggattcgatcgcttccattcctaatgaag

upper sequence: GLYMA01G39780.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0129g00660.t01 (Vitis vinifera), 5'ss of exon 1
TCGTCACTTACGAGGATCTGCAACCTGATATTGAGCGCATTGCAAATGGTGACCGCTCTCCCATCTTGTGCGCTCACCCAATCTCCGAGTTTCTCACCAGgtacgatttcttaatatttcaggcgtatagtatgaatgaatgtcctttgta----ttttactgatcgtgcttgaatgaatgaa---ttaaaattacag
| || ||||| ||||||||||| || |||||| |||| ||||| ||||| || |||||||| |||||||   ||||||| ||||| ||||| || |||||||  ||||   ||   | |  ||  | || ||| ||||  ||| || |||     | | | |||  ||  ||  ||   ||     || ||  | |||
TGGTTACTTATGAGGATCTGCAGCCAGATATTCAGCGTATTGCTAATGGAGATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAGgtctgatt--ctagcctctgtggtct-taatataaatgtgtgtgctgtgtgactgtgtaagtgaatgttttttgattgttgggggtttgaatctgcag