Sequence
atgc intronic sequence ATGC exonic sequenceTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtatctcccatagccaaattacacatcaagcttttttgttagtgacacaacttttgtgtgtgaaaaagaatgtctttttgtgtttggggagttttgtttt...
Basic information
species | Glycine max |
transcript | GLYMA01G08130.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G08130.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os09g32948.1 (Oryza sativa), 5'ss of exon 1
TCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtatct-cccatagccaaattacacatcaagcttt-tttgttagtgacacaacttttg-tgtgtgaaaaagaatgtctttttgtgtttggggagt-tttgtttt
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TCAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCCAAAGgtatatatacatggacgcactgggcgcgcgcctcgatctgctatagctagatcggtagctgcttgcaacgtagctagctagggtttcttgcgcgcgcctg----
upper sequence: GLYMA01G08130.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
TCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtatctcccatagccaaattacac--atcaagcttttttgttagtgacaca----acttttgtgtgtgaaaaagaatgtctttttgtgtttggggagttttgtttt
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TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct------
upper sequence: GLYMA01G08130.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G129034_T02 (Zea mays), 5'ss of exon 1
TCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtat-ctcccatagccaaat-tacacatcaagcttttttgttagtgacacaacttttgtgtgtgaaaaagaatgtctttttgtgtttggggagttttgtttt
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TCAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGACGCCGAAGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGACAGAGgtatacgcacgcatgcgtgtgcgaacaccacgcacgcacatatat-atacatggacacatggtacatgtgtgtgttctgtggcagttgccggaagccgcag-
upper sequence: GLYMA01G08130.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
TCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtat---ctcccatagccaaattacacatcaagcttttttgttagtgacacaacttttgtgtgtgaaaaagaatgtctttttgtgtttggggagttttgtttt
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TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg---
upper sequence: GLYMA01G08130.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G03710.3 (Arabidopsis thaliana), 5'ss of exon 1
TCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgt-atctcccatagccaaattacacatcaagcttttttgttagtgacacaacttttgtgtgtgaaaaagaatgtc--tttttgtgtttggggagttttgtttt
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TCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGATGCTGAGATTGCTCTTCTCATTTTCTCTAACCGTGGCAAGCTCTACGAATTCTGCAGCAGCCCTAGgtgaaaactctttaatctttgatatatctactttttccctcaaagtttctatattttgatccatgttagggttttgattcttaaggattataaaggatat---
upper sequence: GLYMA01G08130.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g00110.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtatctcccatagccaaattacacatcaagcttttttgttagtg-acaca-acttttgtgtgtgaaaaagaatgtctttttgtgtttggggagttttgtttt
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TGAAGAAGGCCTATGAGCTTTCAGTTTTGTGTGATGCTGAGGTTGCGCTCATCATTTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCGGCTCTAGgtatatttctttctctatcctttcttttatctcatctatctatacacttacatgtctatctatgtacatgcttgtctgcc-atgaacgcgggtttttttct-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5752511|gb|AI959798.1|AI959798EST: ATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAG CACGGCCAAGACACTTGAACGGTATCACAGATGCAGTTATGGAGCCTTGGA
genomic: ATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtatctccca ... ttggtttcagCACGGCCAAGACACTTGAACGGTATCACAGATGCAGTTATGGAGCCTTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtatctcccatagccaaattacacatcaagcttttttgttagtgacacaacttttgtgtgtgaaaaagaatgtctttttgtgtttggggagttttgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggagt