1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTGTGATGGGCGGTGGCCAGGACGCATCGCAAGTGACAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAGgtaagctccatgttctgacctgggctcgggttgcaaggggttcaggaacacgtgcagaccggatggttgggcagtggactaacttggtgataccgtcgaa...
species | Chlamydomonas reinhardtii |
transcript | EDP03292 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAG ATCTTCCAGGAGGAGTTTGGGCGTGTGCGCGGCCACTTCGGCCCCATCAACEST: gi|161804380|gb|FC092712.1|FC092712
genomic: CAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAGgtaagctcca ... tcccctgcagATCTTCCAGGAGGAGTTCGGGCGTGTGCGCGGCCACTTCGGCCCCATCAAC
EST: CAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAG ATCTTCCAGGAGGAGTTTGGGCGTGTGCGCGGCCACTTCGGCCCCATCAACEST: gi|9210373|gb|BE337288.1|BE337288
genomic: CAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAGgtaagctcca ... tcccctgcagATCTTCCAGGAGGAGTTCGGGCGTGTGCGCGGCCACTTCGGCCCCATCAAC
EST: CAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAG ATCTTCCAGGAGGAGTTCGGGCGTGTGCGCGGCCACTTCGGCCCCATCAACEST: gi|7709645|gb|AW773016.1|AW773016
genomic: CAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAGgtaagctcca ... tcccctgcagATCTTCCAGGAGGAGTTCGGGCGTGTGCGCGGCCACTTCGGCCCCATCAAC
EST: CAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAG ATCTTCCAGGAGGAGTTTGGGCGTGTGCGCGGCCACTTCGGCCCCATCAAC
genomic: CAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAGgtaagctcca ... tcccctgcagATCTTCCAGGAGGAGTTCGGGCGTGTGCGCGGCCACTTCGGCCCCATCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGATGGGCGGTGGCCAGGACGCATCGCAAGTGACAACGACAGCAGCGCAGGCCGGTGGCTTCGAGGCCAGGTTCTTCCACAAGgtaagctccatgttctgacctgggctcgggttgcaaggggttcaggaacacgtgcagaccggatggttgggcagtggactaacttggtgataccgtcgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtga