1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGACCGGCGAGCACATTATTGCCGGTGCCGGTGAGCTGCATCTGGAGATTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgtccgcgtcggctgcggggaggagggatagtcaaaagggtcgggagggcaccgggggcggtgggcgcctgggcgggcaggcgggaggggtca...
species | Chlamydomonas reinhardtii |
transcript | EDO96511 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: -TTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGACEST: gi|49469170|gb|BP097031.1|BP097031
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGAC
EST: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCEST: gi|10792792|gb|AV630158.1|AV630158
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCC
EST: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGACEST: gi|10781763|gb|AV638443.1|AV638443
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGAC
EST: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGACEST: gi|49466593|gb|BP094506.1|BP094506
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGAC
EST: TTTGCCTGATGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCGTGGTGTCTTEST: gi|10772405|gb|AV623228.1|AV623228
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCCGTGGTGTCTT
EST: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGACEST: gi|16071957|gb|BI873953.1|BI873953
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGAC
EST: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGACEST: gi|10790749|gb|AV628115.1|AV628115
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGAC
EST: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGACEST: gi|10768762|gb|AV619587.1|AV619587
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGAC
EST: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGACEST: gi|6551903|gb|AV397687.1|AV397687
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGAC
EST: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAG ATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGAC
genomic: TTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgt ... tctgctgcagATCTCGGAGCCCGTGGTGTCTTTCCGCGAGACCGTGACCGCCCAGTCGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGACCGGCGAGCACATTATTGCCGGTGCCGGTGAGCTGCATCTGGAGATTTGCCTGAAGGATCTGCAGGACGACTTCATGGGCGGCGCTGAGATCAAGgtgagcgcgtccgcgtcggctgcggggaggagggatagtcaaaagggtcgggagggcaccgggggcggtgggcgcctgggcgggcaggcgggaggggtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA