1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGAGCCACATGTCCACCGCCGCCCGGGTGCGCGGCTACCTGGGGCCGGACCAGTTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGGgtgaggcgctgggagcaaagacgggggctgggcaagagttggggtgagcgagggctggggtgagctgggagctgtgtggtgcgccgcagctgcgcactgc...
species | Chlamydomonas reinhardtii |
transcript | EDP06365 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAGTTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGG GTGTCCCCCGCAAGCCCGGCATGACGCGCGACGACCTGTTCAACATCAACGEST: gi|15368085|gb|BI527511.1|BI527511
genomic: CCAGTTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGGgtgaggcgct ... ccgcccgcagGTGTCCCCCGCAAGCCCGGCATGACGCGCGACGACCTGTTCAACATCAACG
EST: CCAGTTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGG GTGTCCCCCGCAAGCCCGGCATGACGCGCGACGACCTGTTCAACATCAACGEST: gi|161807946|gb|FC097564.1|FC097564
genomic: CCAGTTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGGgtgaggcgct ... ccgcccgcagGTGTCCCCCGCAAGCCCGGCATGACGCGCGACGACCTGTTCAACATCAACG
EST: CCAGCTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGG GTGTCCCCCGCAAGCCCGGCATGACGCGCGACGACCTGTTCAACATCAATGEST: gi|8576780|gb|BE129417.1|BE129417
genomic: CCAGTTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGGgtgaggcgct ... ccgcccgcagGTGTCCCCCGCAAGCCCGGCATGACGCGCGACGACCTGTTCAACATCAACG
EST: CCAGTTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGG GTGTCCCCCGCAAGCCCGGCATGACGCGCGACGACCTGTTCAACATCAACG
genomic: CCAGTTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGGgtgaggcgct ... ccgcccgcagGTGTCCCCCGCAAGCCCGGCATGACGCGCGACGACCTGTTCAACATCAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGCCACATGTCCACCGCCGCCCGGGTGCGCGGCTACCTGGGGCCGGACCAGTTGGGGGCGGCGCTGACCGGCGCGGCACTGGTCATCATACCCGCGGgtgaggcgctgggagcaaagacgggggctgggcaagagttggggtgagcgagggctggggtgagctgggagctgtgtggtgcgccgcagctgcgcactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagac
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtgt