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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcctcggcctcgggagtcctttaccgcgcccaaatgaaaaggcccgcgactgatcctggcctgactcaattttcttgcgctcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05930
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP05930 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 5'ss of exon 2
TGTGATGCTGGTCGGCTGGGGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaag-----------ttgcctcggcctcgggagtc-ctttaccgcgcccaaat--gaaaaggcccgcgactgatcctggcctga-----ctcaattttcttgcgctcgcag--------------------------------
  ||||||| ||||| ||||| || ||||||||  ||||||| || ||||||||||| ||||||||  ||||||           | || ||   || || | || |||||    |||    |  |   |    |  |    ||  || |  ||     ||  |||   || ||                                       
AATGATGCTCGTCGGTTGGGGTGGCAACAACGGGTCCACTCTCACGGCTGGTATCCTCGCCAACAAAGAgtaagcgcttccttactcgcttctttctgggaattcactttagattgccttgctctgctgattttcatgttgtattttgtcaagaaatccctggattgatttacgtgtatgtttgatgagatgtgttgtctttgtggacgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49465125|gb|BP093038.1|BP093038
EST:     GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA                         TGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
genomic: GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcc ... gcgctcgcagTGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
EST: gi|22049824|gb|BQ808947.1|BQ808947
EST:     GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA                         TGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
genomic: GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcc ... gcgctcgcagTGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
EST: gi|9027625|gb|BE237665.1|BE237665
EST:     GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA                         TGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
genomic: GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcc ... gcgctcgcagTGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
EST: gi|22063814|gb|BQ815437.1|BQ815437
EST:     GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA                         TGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
genomic: GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcc ... gcgctcgcagTGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
EST: gi|9460519|gb|BE453275.1|BE453275
EST:     GGCGGCAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA                         TGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
genomic: GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcc ... gcgctcgcagTGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
EST: gi|161792254|gb|FC080338.1|FC080338
EST:     GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA                         TGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
genomic: GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcc ... gcgctcgcagTGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
EST: gi|49470986|gb|BP098847.1|BP098847
EST:     GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA                         TGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAA
genomic: GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcc ... gcgctcgcagTGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAA
EST: gi|22063346|gb|BQ815167.1|BQ815167
EST:     GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA                         TGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
genomic: GGCGGTAACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcc ... gcgctcgcagTGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
EST: gi|161790429|gb|FC079964.1|FC079964
EST:     AACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCA                         TGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG
genomic: AACAACGGTACCACTCTGACTGCTGGTATCCTGGCCAACAAGCAgtaagttgcc ... gcgctcgcagTGGTATCACCTGGATGACGAAGGACGGCCTTAAGAAGCCCAACTTCTACGG