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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGAGAGCTTCGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagatactgctttattatgctgaagatcatggttgctagcttttggaagcactggcgcggtctgggccgggccatcggcgtggcgcccttcctcg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05185
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161802951|gb|FC088290.1|FC088290
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|22049091|gb|BQ808557.1|BQ808557
EST:     CTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|22049092|gb|BQ808558.1|BQ808558
EST:     CTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6549529|gb|AV395313.1|AV395313
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161824195|gb|FC107778.1|FC107778
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161799270|gb|FC086416.1|FC086416
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6547040|gb|AV392824.1|AV392824
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161794288|gb|FC079382.1|FC079382
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10787722|gb|AV644394.1|AV644394
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161798909|gb|FC084651.1|FC084651
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161823947|gb|FC106867.1|FC106867
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|49470641|gb|BP098502.1|BP098502
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161815305|gb|FC101563.1|FC101563
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10772653|gb|AV623476.1|AV623476
EST:     GATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: GATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161807216|gb|FC097289.1|FC097289
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|49469298|gb|BP097159.1|BP097159
EST:     CGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|7615264|gb|AW720713.1|AW720713
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161803933|gb|FC093562.1|FC093562
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10775246|gb|AV631926.1|AV631926
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6549243|gb|AV395027.1|AV395027
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGACATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|49467012|gb|BP094925.1|BP094925
EST:     GAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: GAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10786794|gb|AV643466.1|AV643466
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|22073702|gb|BQ823040.1|BQ823040
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161823719|gb|FC108563.1|FC108563
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|49470490|gb|BP098351.1|BP098351
EST:     CGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6544131|gb|AV389915.1|AV389915
EST:     ACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: ACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|7413132|gb|AW651886.1|AW651886
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161795147|gb|FC078798.1|FC078798
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161805270|gb|FC090339.1|FC090339
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161809087|gb|FC095741.1|FC095741
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161819586|gb|FC106685.1|FC106685
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161809240|gb|FC098676.1|FC098676
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161805086|gb|FC092534.1|FC092534
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161800297|gb|FC082776.1|FC082776
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161810895|gb|FC099648.1|FC099648
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161793133|gb|FC078097.1|FC078097
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10780020|gb|AV636700.1|AV636700
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|49467973|gb|BP095834.1|BP095834
EST:     GAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: GAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161800248|gb|FC082766.1|FC082766
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161807550|gb|FC099781.1|FC099781
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161791041|gb|FC080290.1|FC080290
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10774575|gb|AV625398.1|AV625398
EST:     GACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTAACCA
genomic: GACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6540958|gb|AV386742.1|AV386742
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161818543|gb|FC103900.1|FC103900
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6541017|gb|AV386801.1|AV386801
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|7615283|gb|AW720731.1|AW720731
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161798929|gb|FC082994.1|FC082994
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161819113|gb|FC108071.1|FC108071
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10774403|gb|AV625226.1|AV625226
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161808677|gb|FC096774.1|FC096774
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161791840|gb|FC081478.1|FC081478
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|49464989|gb|BP092902.1|BP092902
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10785863|gb|AV642535.1|AV642535
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6547009|gb|AV392793.1|AV392793
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|49464300|gb|BP092213.1|BP092213
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6543780|gb|AV389564.1|AV389564
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161798315|gb|FC084330.1|FC084330
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161794959|gb|FC077427.1|FC077427
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161820319|gb|FC109186.1|FC109186
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10782860|gb|AV639532.1|AV639532
EST:     GGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: GGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161823566|gb|FC109021.1|FC109021
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161821088|gb|FC110033.1|FC110033
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161823707|gb|FC106081.1|FC106081
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6546911|gb|AV392695.1|AV392695
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161824005|gb|FC107718.1|FC107718
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161792212|gb|FC079815.1|FC079815
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161821331|gb|FC106506.1|FC106506
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6545886|gb|AV391670.1|AV391670
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161805008|gb|FC091689.1|FC091689
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161793233|gb|FC081005.1|FC081005
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161818607|gb|FC102794.1|FC102794
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161812077|gb|FC096631.1|FC096631
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6551724|gb|AV397508.1|AV397508
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161797029|gb|FC086791.1|FC086791
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|10792958|gb|AV630324.1|AV630324
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|6546580|gb|AV392364.1|AV392364
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161822634|gb|FC108492.1|FC108492
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161821413|gb|FC106536.1|FC106536
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161792646|gb|FC077766.1|FC077766
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
EST: gi|161795346|gb|FC078542.1|FC078542
EST:     CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACG                         GTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA
genomic: CGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagat ... cgatgaccagGTTTCGAGAAGCCCTCGGCCATTCAGTCGAAGGGTATCGTGCCGTTCACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACAACGAGGACAAGTTCTACACCGACTGGGAGGAGAGCTTTGAGAGCTTCGACCAGATGAACCTGCACGAGAACCTGCTGCGCGGCATTTACGCGTACGgtgagtagatactgctttattatgctgaagatcatggttgctagcttttggaagcactggcgcggtctgggccgggccatcggcgtggcgcccttcctcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgggc