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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGGTGGCGACGCTGGATTTCGCCTCGCTGTACCCGTCCATCATGATGGCGCACAACCTCTGCTACACCACCCTGCTCACGAAGGACCAgtgagtacctggcgggcgcgagcgaggggggattttgttgtaggtgctataactggtggtgcggtaggcgcaggcggcagacccgtataactcgaatgctggctgtccccatggcacactgctgcgacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09647
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP09647 (Chlamydomonas reinhardtii), 5'ss of exon 15
lower sequence: PP1S14_182V6.1 (Physcomitrella patens), 5'ss of exon 15
-----------------------GCCCGGTGGCGACGCTGGATTTCGCCTCGCTGTACCCGTCCATCATGATGGCGCACAACCTCTGCTACACCACCCTGCTCACGAAGGACCAgtgagtacctggcgggcgcgagcgaggggggattttgttgtaggtgctataactggtggtgcggtaggcgcaggcggcagacccgtataactcgaatgctggctgtccccatggcacactgctgcgacag
                         ||  | || |||||||||||||| |||||||| || ||||| ||||||||  ||||||| || |||  |||  || | ||      | |   ||| | ||    ||     |||   |   || |  || |||  ||    | | || | |  ||| |      | |||||    ||  ||   |||                                
TGCCAAAGCTGGGTATTATGACAAGCCAATTGCTACGCTGGATTTCGCATCGCTGTATCCCTCCATTATGATGGCCTACAACCTTTGTTACTGCACTTTGgtaaccttctgc-atctagt-cgtgttatgcaacttcgacatgcagttgtactg-aggctct----ccgttgtttccatagccat---tgtcagaca---atggcttctatga-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49468874|gb|BP096735.1|BP096735
EST:     ATCATGATGGCGCACAACCTCTGCTACACCACCCTGCTCACGAAGGACCA                         GCTCAACATCGTGCCGCCGGAGGACCGCGAGCAGAGCCCCAGCGGCGACTG
genomic: ATCATGATGGCGCACAACCTCTGCTACACCACCCTGCTCACGAAGGACCAgtgagtacct ... gctgcgacagGCTCAACATCGTGCCGCCGGAGGACCGCGAGCAGAGCCCCAGCGGCGACTG