1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CGCCACCACGCACTTCGAGACCACGGTGGACGACGTGCTGGACATGTACCGCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagggggggaggggcgcgtggcttacagggaatcgacgcacgcatgagtgtgtgcatgtgtttgggggagggtgccgaggtccagtgggaacag...
species | Chlamydomonas reinhardtii |
transcript | EDP02072 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|23365053|gb|BU652873.1|BU652873
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|16431747|gb|BI996973.1|BI996973
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|16433637|gb|BI998863.1|BI998863
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCCAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|23358398|gb|BU646218.1|BU646218
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|23367838|gb|BU655656.1|BU655656
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|23365705|gb|BU653525.1|BU653525
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCTAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|16431543|gb|BI996769.1|BI996769
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|15695447|gb|BI719752.1|BI719752
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCCCCGCCAAGGAGCCCGTCACG GTCCAGGCGTAAGCGCGGCGTGTTCCCCAGTCCCTGTGTGTGGCACGTGTTEST: gi|22050063|gb|BQ809048.1|BQ809048
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|23361180|gb|BU649000.1|BU649000
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCAAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|16072684|gb|BI874680.1|BI874680
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|23367696|gb|BU655514.1|BU655514
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTTEST: gi|16437589|gb|BM002809.1|BM002809
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
EST: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACG GTCCAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
genomic: GCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagg ... cctgttgcagGTCGAGGCGTAAGCGCGGCGTGTGCCGCAGTCGCTGTGTGTGGCACGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCACCACGCACTTCGAGACCACGGTGGACGACGTGCTGGACATGTACCGCCGCATCACCGGCCGCGACCTGGACCTCACCGCCAAGGAGCCCGTCACGgtaggcgagggggggaggggcgcgtggcttacagggaatcgacgcacgcatgagtgtgtgcatgtgtttgggggagggtgccgaggtccagtgggaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt