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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaaactcaagttacaatctttaaccataaacttgcgtttataaaggaaactaaaacattgaggaaaccacggttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G46110.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46110.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 9
ACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaaactca--agttacaatctttaaccataaacttgcgt-ttataaaggaaactaaaacattgaggaaaccacggttgcag------------
  | || ||||| ||    || || ||||||||||| ||  |||| || ||| |||| |||||||| ||||| ||||||||||| || |||||||||||||||   ||    |    || | || |  | ||| |    |||| |  ||||||||  | |   | ||||       |      ||               
GATGAAGCATGGCTTTAATGATGCAATTGCTAAAGTGGGTCTGACCAAGTTCCTCTCAGATCTCTTTTGGGTGGGAATGTTTTATCACCTCTACAATCAGgtacattatttttggggagcttcagttgtaaactaacgtcttgtggattataaagttatcactatcattctttttcctctcaatgttatttaacaatcaa

upper sequence: AT5G46110.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ38162 (Selaginella moellendorffii), 5'ss of exon 8
ACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaaactcaagttacaatctttaaccataaacttgcgtttataaaggaaactaaaacattgaggaaaccacggttgcag
| |  | || || || || || || ||||| ||||||||||||   || ||  |    |||||||||||||||||||||||||| ||| | || || |||||||      |||  ||||     ||||  |   |||   | | || | || |       |                        
ATTGCAACACGGGTTTGCAGATGCCATTGCCAAAGTTGGAATGGTGAAGTTTCTGAGCGATCTCTTCTGGGTTGGAATGTTTTATCATTTGTATAACCAGgtaa-----gactttagtt-----cttttgcatcaaaggcg-gcttgtcaatgttctcccag-----------------------

upper sequence: AT5G46110.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ15759 (Selaginella moellendorffii), 5'ss of exon 9
ACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaaactcaagttacaatctttaaccataaacttgcgtttataaaggaaactaaaacattgaggaaaccacggttgcag
| |  | || || || || || || ||||| ||||||||||||   || ||| |    |||||||||||||||||||||||||| ||||| || || |||||||      |||  ||||     ||||  |   |||   | | || | || |       |                        
ATTGCAACACGGGTTTGCAGATGCCATTGCCAAAGTTGGAATGGTGAAGTTCCTGAGCGATCTCTTCTGGGTTGGAATGTTTTATCATCTGTATAACCAGgtaa-----gactttagtt-----cttttgcatcaaaggcg-gcttgtcaatgttttcccag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164098197|gb|ES185613.1|ES185613
EST:     TCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTG-AGAGGGTTGCACCGCTGACTCAC
genomic: TCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCAC
EST: gi|125287819|gb|EL301904.1|EL301904
EST:     TCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATA
genomic: TCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATA
EST: gi|125085965|gb|EL145610.1|EL145610
EST:     TTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
genomic: TTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
EST: gi|125242756|gb|EL256841.1|EL256841
EST:     CTGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
genomic: CTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
EST: gi|124766137|gb|EH856267.1|EH856267
EST:     ATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCAACCGCTGACTCACGCGGTTGG
genomic: ATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCA-CCGCTGACTCACGCGGTTGG
EST: gi|124999141|gb|EL071410.1|EL071410
EST:     AATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTAGG
genomic: AATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTT-GG
EST: gi|125136860|gb|EL176890.1|EL176890
EST:     CTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGTACCGCTGACTCACGCGGTTGGA
genomic: CTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
EST: gi|125112482|gb|EL163550.1|EL163550
EST:     AATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCAACGCGGTTAG
genomic: AATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCA-CGCGGTT-G
EST: gi|125278520|gb|EL292605.1|EL292605
EST:     CATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTG
genomic: CATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTG
EST: gi|125141710|gb|EL179211.1|EL179211
EST:     ATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
genomic: ATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
EST: gi|124958150|gb|EL032917.1|EL032917
EST:     CATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTACTACAATCAG                         CTGGCTACCAATACCT
genomic: CATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCT-CTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCT
EST: gi|124711937|gb|EH803339.1|EH803339
EST:     CTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
genomic: CTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
EST: gi|125193837|gb|EL208791.1|EL208791
EST:     TGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
genomic: TGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
EST: gi|124794669|gb|EH884348.1|EH884348
EST:     ATCTCTGATCTCTTCTGGGTTGG-ATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
genomic: ATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
EST: gi|164180730|gb|ES123846.1|ES123846
EST:     GTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
genomic: GTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
EST: gi|125291977|gb|EL306062.1|EL306062
EST:     CATCTCTGATCTCTTCTGGGTTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGG
genomic: CATCTCTGATCTCTTCTGGG-TTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGG
EST: gi|125102096|gb|EL156983.1|EL156983
EST:     AATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
genomic: AATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
EST: gi|125023775|gb|EL096044.1|EL096044
EST:     TCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATA
genomic: TCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATA
EST: gi|164038675|gb|ES207982.1|ES207982
EST:     CTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTAGACTCACGCGGTTGG
genomic: CTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCT-GACTCACGCGGTTGG
EST: gi|124729373|gb|EH820775.1|EH820775
EST:     TCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAC                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTG
genomic: TCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTG
EST: gi|125189571|gb|EL204525.1|EL204525
EST:     CATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGG
genomic: CATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGG
EST: gi|124868001|gb|EH952438.1|EH952438
EST:     TGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCG
genomic: TGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCG
EST: gi|124903782|gb|EH977862.1|EH977862
EST:     TCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAG                         CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA
genomic: TCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCAGgtaatgtaaa ... acggttgcagCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGA