Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAGgtgggactttctcttcttctctacaaaaattccagttccatacatcaacaagaaaagtgatggcttctcattttgtttcttactttctccag

Basic information

species Arabidopsis thaliana
transcript AT5G45170.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124915306|gb|EH989180.1|EH989180
EST:     TGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAG                         ATTGGAAAAGATTGTTGTTGCATTGCGTGCTGCTGCGGAACACATAGG
genomic: TGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAGgtgggacttt ... ctttctccagATTGGAAAAGATTGTTGTTGCATTGCGTGCTGCTGCGGAACACATAGG
EST: gi|125135172|gb|EL175643.1|EL175643
EST:     TAGTGTTGATATTGACACAACCTCATCTGAGAG                         ATTGGAAAAGATTGTTGTTGCATTGCGTGCTGCTGCGGAACACATAGGATT
genomic: TAGTGTTGATATTGACACAACCTCATCTGAGAGgtgggacttt ... ctttctccagATTGGAAAAGATTGTTGTTGCATTGCGTGCTGCTGCGGAACACATAGGATT
EST: gi|116478591|gb|EG521183.1|EG521183
EST:     GCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAG                         ATTGGAAAAGATTGTTGTTGCATTGCGTGCTGCTGCGGAACAC
genomic: GCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAGgtgggacttt ... ctttctccagATTGGAAAAGATTGTTGTTGCATTGCGTGCTGCTGCGGAACAC
EST: gi|125136543|gb|EL176573.1|EL176573
EST:     GCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAG                         ATTGGAAAAGATTGTTGTTGCATTGCGTGCT
genomic: GCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAGgtgggacttt ... ctttctccagATTGGAAAAGATTGTTGTTGCATTGCGTGCT
EST: gi|124995705|gb|EL067974.1|EL067974
EST:     GCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAG                         ATTGGAAAAGATT
genomic: GCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAGgtgggacttt ... ctttctccagATTGGAAAAGATT
EST: gi|116478590|gb|EG521182.1|EG521182
EST:     GCATCA-TGCTAAAGCTTAGTGTTGATATTGACACAAC-TCATCTGAGAG                         ATTGGAAAAGATTGTTGTTGCATTGCGTGCTGCTGCGGA
genomic: GCATCAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAGgtgggacttt ... ctttctccagATTGGAAAAGATTGTTGTTGCATTGCGTGCTGCTGCGGA
EST: gi|125197198|gb|EL212152.1|EL212152
EST:     CAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAG                         ATTGGAAAAGATT
genomic: CAATGCTAAAGCTTAGTGTTGATATTGACACAACCTCATCTGAGAGgtgggacttt ... ctttctccagATTGGAAAAGATT