Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGTCAAAACTAGTTGTGAAAGGAAACATTATATGGTCTGATAACTCGAATGACCTCAACGTTGTAGTCACTAGCCCTTCACATTTCAAGATTTGCACGgtactcatcatttccctattcttctatccaccaaagatcaaagatgatgaaactgaaattgtgacctcttcttgcatttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G04510.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 11
CCCGTCAAAACTAGTTGTGAAAGGAAACATTATATGGTCTGATAACTCGAATGACCTCAACGTTGTAGTCACTAGCCCTTCACATTTCAAGATTTGCACGgtac-tcatcatttccctattcttctatccaccaaagatcaaagatgatgaaactgaaattgtgacctcttcttgcatttgtgcag--------------------
|||  | || ||  | || || ||||| || || |||||||| ||| | |||||||||| | |   |||||| || |||||||||||||||||||||||||||  ||     || || | |||||| |        |  || |  |  |    |  |  || | |||||||||        ||||                     
CCCTGCGAAGCTGATGGTAAAGGGAAATATAATCTGGTCTGACAACCCTAATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACGgtatgtcccttctttcccaatcttctgtttt----ggggcacatttccttggtc--atttttttacctcttctaaagacattgcaattgctgaccacatggaccta