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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGGTGATGTAGCCACCTTCCCAATGAAACTCTACAATGAAATGAGACGCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataattataatgcttcttcaacctgtcttaatgaaggagctgtataaaatcatcctaattgaatcgattgatataatgattttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G03630.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03630.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 5'ss of exon 9
CATTGGTGATGTAGCCACCTTCCCAATGAAACTCTACAATGAAATGAGACGCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAGgta-ataattataatgcttcttcaacctgtcttaatgaaggagctgtataaaatcatcctaattg--aatcgattga---tataatgattttgtag-----
  | || ||||| || || |||||| ||||| | ||||||||||| ||| | |||||||| || |||||||| || ||||| ||||| ||||| || ||||||    | | |  |   |  | |   |   || |||||  | ||   |  | |  |   |  ||  ||| |  |||   ||  |  | |   | |     
TGTGGGAGATGTTGCTACTTTCCCACTGAAATTGTACAATGAAATTAGAAGAGTTGAACATGTCGACCATGCCCGGAAATCAGCTGAGCAAGCTGTCAAGgtatgcgacttttctttatgcttagt-tacttttatgaaccatcttagttgatttgtttaatctgctaattgggtgaagttaccaaaaatacattgttctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116465830|gb|EG508422.1|EG508422
EST:     GCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
genomic: GCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
EST: gi|124745328|gb|EH836288.1|EH836288
EST:     GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGA
genomic: GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGA
EST: gi|86079524|gb|DR375281.1|DR375281
EST:     GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
genomic: GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
EST: gi|125196620|gb|EL211574.1|EL211574
EST:     GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
genomic: GCGTTGAACACGTTGACCATGCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT
EST: gi|116465831|gb|EG508423.1|EG508423
EST:     GCTCGCAAATCCGCTGAACAAGCCGTAAAG                         GCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATTTT
genomic: GCTCGCAAATCCGCTGAACAAGCCGTAAAGgtaataatta ... gattttgtagGCAATCAAGGCGGCTGAGGAAGGGAACTCAATTCCGGAATATGACTATCTT