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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAGGAGTTGTTCAAAGCCGCTGACCTGAATGGGGATGGTGTTGTTACAATTGATGAGTTGGCTGCACTTCTTGCCGTTCAACAGGAACAgtaataacattctatacagtgccaatgttgagaacttctgtatatacacaaatatttgtacatccttgaatcccagtaatttgcatgcattgattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G25970.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25970.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv12s0055g00710.t01 (Vitis vinifera), 5'ss of exon 5
AAAGAGGAGTTGTTCAAAGCCGCTGACCTGAATGGGGATGGTGTTGTTACAATTGATGAGTTGGCTGCACTTCTTGCCGTTCAACAGGAACAgtaataacattctatacagtgccaatgttgagaacttctgtatatacacaa-atatttgtacatccttgaatcccagtaatttgcatgcattgattgcag-
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AAAGAGGAGCTCTTTAAAGCAGCTGACAAGAACGAGGATGGTGTTGTTAGCATGGATGAGTTGACTGTTCTTCTTGCTATTCAACAAGAAAAgtaatggt-ccctataaaattttgaagcaggaagcttttaattgtgaaagttatgcttttttttttttgtgtgtgtgtgtattttattttttgtattttgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163985805|gb|ES067145.1|ES067145
EST:     GTTGTTACAATTGATGAGTTGGCTGCACTTCTTGCCGTTCAACAGGAACA                         GGAGCCAATTATAAATAGTTGTCCGGTTTGCGGTGAGGCTCTTC
genomic: GTTGTTACAATTGATGAGTTGGCTGCACTTCTTGCCGTTCAACAGGAACAgtaataacat ... ttgattgcagGGAGCCAATTATAAATAGTTGTCCGGTTTGCGGTGAGGCTCTTC