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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAGCTTATGAGCTAGATTCAGTGAGCGGATCCGATAAAGATCCGAACAGAGAGTTCTTGCTTCTCCAAGGTGTTCGTTTCGCGTTTAGAGTCCATCAGgtaaaataaaaacaagaaacataagaaacctaaaatgaccaaaatttctcagttgtttgaatatataactgaatatgtttgttttgttatgtatag

Basic information

species Arabidopsis thaliana
transcript AT3G25690.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25690.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: EFJ36253 (Selaginella moellendorffii), 5'ss of exon 8
------AGTAGCTTATGAGCTAGATTCAGTGAGCGGATCCGATAAAGATCCGAACAGAGAGTTCTTGCTTCTCCAAGGTGTTCGTTTCGCGTTTAGAGTCCATCAGgtaaaataaaaacaagaaacataagaaacctaaaatgaccaaaatttctcagttgtttgaatatataactgaatatgtttgttttgttatgtatag
      |||     | ||||| || || ||   |  |   ||||| || ||     ||||||||||||| |||||||| || || ||||| |||||||| || |||||| |||            |   ||    | ||  |      || ||   |    || |    ||   ||||   ||||   ||            
GAACAGAGTTATAAAGGAGCTGGACTCTGT---CCAA---GATAAGGAGCCACTACGAGAGTTCTTGCTCCTCCAAGGAGTCCGGTTCGCCTTTAGAGTTCACCAGgtagaat------------cgctag----ccaagcttttgctaactttcgatccattcgccactaatcctgaccttgttctcttcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125029575|gb|EL101844.1|EL101844
EST:     CGTTTAGAGTCCATCAG                         TTTGCTGGAGGGTTTGATGCAGAGAGCATGAAAGCATTTGAGGAACTTAGA
genomic: CGTTTAGAGTCCATCAGgtaaaataaa ... ttatgtatagTTTGCTGGAGGGTTTGATGCAGAGAGCATGAAAGCATTTGAGGAACTTAGA