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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCGCGTGATAAAGGTCTTTCTTCATGGGGCTGGAATCTGAATGGCCAGCATTCAACTTATCATGCTCTATTTCCTCGGGCTTGGACTATATATGATGgtacgaccctgcaggaattcgtcatttaaagctagcatatttctgtcggtgtatctcttgtaacgattcttctgtttctag

Basic information

species Arabidopsis thaliana
transcript AT3G24180.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24180.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os10g33420.1 (Oryza sativa), 5'ss of exon 7
AAGTCGCGTGATAAAGGTCTTTCTTCATGGGGCTGGAATCTGAATGGCCAGCATTCAACTTATCATGCTCTATTTCCTCGGGCTTGGACTATATATGATGgtacgaccctgcaggaattcgtcatttaaagctagcatatttctgtcggtgta--------tctcttgtaac----gattcttctgtttctag----------
|| |    |||    ||  |||||||||||| ||||||  |||  || || ||||| || ||||||||| |||||||| |||| |||||| | |||||||||| |  ||  || | |   ||     |  ||| ||||  || ||  ||   |        ||| || || |    |||   | || ||   |          
AAATGTAATGACTCTGGAATTTCTTCATGGGACTGGAACTTGAGCGGTCAACATTCTACCTATCATGCTTTATTTCCTAGGGCATGGACTGTTTATGATGgtatg--ccatcatggagctgtggaacattgcttgcat-cttgtgatggcacaaacacttctcttttctaccaagagatggatatgctttatgccaagccagc

upper sequence: AT3G24180.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv05s0051g00910.t01 (Vitis vinifera), 5'ss of exon 7
AAGTCGCGTGATAAAGGTCTTTCTTCATGGGGCTGGAATCTGAATGGCCAGCATTCAACTTATCATGCTCTATTTCCTCGGGCTTGGACTATATATGATGgtacgaccctgcaggaattcgtcatttaaa--gcta---gcatatttctgtcggtgtatctcttgtaacgattcttctg-tttctag
|| ||  | ||| | ||| | || |||||||| |||||| ||| ||| |||||||| |||||||||||||| |||||  |||| ||||| |||||||||||||  |   |     |     ||  ||| |  | ||   | | ||||   | |   | ||  ||| ||  |   ||||  |||  ||
AAATCTGGCGATCAGGGTATATCATCATGGGGTTGGAATTTGAGTGGTCAGCATTCTACTTATCATGCTCTCTTTCCAAGGGCCTGGACAATATATGATGgtattattttattttatcctttctattacacagatatatgaacattttcctggtattttcatttgaaagtacaattctaatttgcag

upper sequence: AT3G24180.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S134_55V6.1 (Physcomitrella patens), 5'ss of exon 8
AAGTCGCGTGATAAAGGTCTTTCTTCATGGGGCTGGAATCTGAATGGCCAGCATTCAACTTATCATGCTCTATTTCCTCGGGCTTGGACTATATATGATGgtacgaccctgcaggaattcgtcatttaaagctagcatatttc-tgtcggtgtatctcttgtaacgattcttctgtttctag-----------------------
| |     |||||   || | || || |||| |||||||||  |||||||| | ||||| ||||||||||| || || || || ||||| |||||||| |||||     | | || |||| |  | |    ||    |  ||| ||| ||  ||    |       ||  |||  |||  |                        
ACGAAAGATGATACCAGTGTATCGTCTTGGGACTGGAATCTAGATGGCCAGAACTCAACATATCATGCTCTTTTCCCCCGTGCGTGGACAATATATGAAGgtac----ttac-ggtattccttttgtgtctcttttctggttcatgtaggaataagattcacgtgcatagttcatttttgaagttggatgactctttaacatatt

upper sequence: AT3G24180.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: EFJ13820 (Selaginella moellendorffii), 5'ss of exon 7
AAGTCGCGTGATAAAGGTCTTTCTTCATGGGGCTGGAATCTGAATGGCCAGCATTCAACTTATCATGCTCTATTTCCTCGGGCTTGGACTATATATGATGgtacgaccctgcaggaattcgtcatt-taaagctagcatatttctgtcggtgtatctcttgtaacgattcttctgtttctag
||| | |    |  ||   | | | | |||| |||||| ||  | |||||  |||||||||||||||   ||||||| ||||| |||||||| ||||||||||||       ||   || ||| |  | ||   | |   ||||||| ||| | |   |   ||                  
AAGGCTCAAAGTCCAGAAATCTGTGCGTGGGACTGGAACCTTGACGGCCAAAATTCAACTTATCATGGCTTATTTCCGCGGGCGTGGACTATTTATGATGgtacgta-----agaccttagtcctgatcaaatcatctcttttctgt-ggtttgttgatccgaag-----------------