1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGGTTTTGATGACGAAATGAGGGCACTAGTTGCTAGAAATCTTGAAGGAAGGGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAGgtatctgaatatgattattacttttcatgtctcattactatatacgttcttttcacttgtttcatgagttcatagtactttactgaacatacactatctttccatttag
species | Arabidopsis thaliana |
transcript | AT3G24170.3 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATCTTGAAGGAAGGGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAG TTGACAAAAACAGACCAGGGGATCAAAGTCATATCGTCCCATGGGGAGGAAEST: gi|152034638|gb|BP833544.2|BP833544
genomic: ATCTTGAAGGAAGGGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAGgtatctgaat ... ttccatttagTTGACAAAAACAGACCAGGGGATCAAAGTCATATCGTCCCATGGGGAGGAA
EST: GGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAG TTGACAAAAACAGACCAGGGGATCAAAGTCATATCGTCCCATGGGGAGGAAEST: gi|163991226|gb|ES156813.1|ES156813
genomic: GGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAGgtatctgaat ... ttccatttagTTGACAAAAACAGACCAGGGGATCAAAGTCATATCGTCCCATGGGGAGGAA
EST: ATCTTGAAGGAAGGGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAG TTGACAAAAACAGACCAGGGGATCAAAGTCATATCGTCCCATGGGGAGGAAEST: gi|124760853|gb|EH850983.1|EH850983
genomic: ATCTTGAAGGAAGGGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAGgtatctgaat ... ttccatttagTTGACAAAAACAGACCAGGGGATCAAAGTCATATCGTCCCATGGGGAGGAA
EST: ATCTTGAAGGAAGGGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAG TTGACAAAAACAGACCAGGGGATCAAAGTCATATCG
genomic: ATCTTGAAGGAAGGGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAGgtatctgaat ... ttccatttagTTGACAAAAACAGACCAGGGGATCAAAGTCATATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTTTGATGACGAAATGAGGGCACTAGTTGCTAGAAATCTTGAAGGAAGGGGCGTTAATCTGCATCCACAAACAAGTTTGACTCAGgtatctgaatatgattattacttttcatgtctcattactatatacgttcttttcacttgtttcatgagttcatagtactttactgaacatacactatctttccatttag
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - AAGGAA