1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGTCCTGAATTTGCTTCACAGGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAGgttttctatatatttcatccattcttttttagaaccatttatcaactcatacagacatattatttactctggtgtacatgctttggcag
species | Arabidopsis thaliana |
transcript | AT3G16480.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAG TTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTCEST: gi|47829013|gb|CK118697.1|CK118697
genomic: GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAGgttttctata ... gctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC
EST: GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAG TTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTCEST: gi|125257790|gb|EL271875.1|EL271875
genomic: GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAGgttttctata ... gctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC
EST: TGAAATGAACGCTGTTGCTGATGGAAAAG TTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAEST: gi|86061726|gb|DR357483.1|DR357483
genomic: TGAAATGAACGCTGTTGCTGATGGAAAAGgttttctata ... gctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAA
EST: GGSAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAG TTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC
genomic: GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAGgttttctata ... gctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCCTGAATTTGCTTCACAGGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAGgttttctatatatttcatccattcttttttagaaccatttatcaactcatacagacatattatttactctggtgtacatgctttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA