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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCTTTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGAgtgagttagttttcaaatgtatatgcatgctattattagggaaaacaataattgaggcatacaacacccatatatcaaatggaaatgcttcatcaaataa...

Basic information

species Arabidopsis thaliana
transcript AT2G38170.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125217567|gb|EL231650.1|EL231650
EST:     TTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGA                         AACAAAATGCCATT
genomic: TTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATT
EST: gi|86076708|gb|DR372465.1|DR372465
EST:     TTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGA                         AACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG
genomic: TTGCTATTTCATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG
EST: gi|124982803|gb|EL055582.1|EL055582
EST:     ATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGA                         AACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCA
genomic: ATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCA
EST: gi|116473762|gb|EG516354.1|EG516354
EST:     CCATCTGTTTCTTCGTCGACAAACTTCCCCAGA                         AACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG
genomic: CCATCTGTTTCTTCGTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG
EST: gi|124912932|gb|EH986913.1|EH986913
EST:     GTCGACAAACTTCCCCAGA                         AACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG
genomic: GTCGACAAACTTCCCCAGAgtgagttagt ... tatctttcagAACAAAATGCCATTCACTTGGGACATCAAGCGATGAACAATGTCGTCACTG