1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTACAAAAACGACCCTGAGATTTTGGCAATGACAAATTTGATCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAAGgtaaaaagtgaagtattattgggttgttttttcaactcattatatatgaaaacgacactcatggaatggtttttggaatgtag
species | Arabidopsis thaliana |
transcript | AT2G26990.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAAG AGTAACCGGAGGACGATAATGGATGATCCAEST: gi|86080149|gb|DR375906.1|DR375906
genomic: TCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAAGgtaaaaagtg ... tggaatgtagAGTAACCGGAGGACGATAATGGATGATCCA
EST: CGAAATGAGATCATAGAGTTTGAGAGAATMCTAAAG AGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACTACATGGAAEST: gi|86077665|gb|DR373422.1|DR373422
genomic: CGAAATGAGATCATAGAGTTTGAGAGAATACTAAAGgtaaaaagtg ... tggaatgtagAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACTACATGGAA
EST: TCGCAGCATATMAACGAAATGAGAYCATAGAGTTTGAGAGAATACTAAAG AGTAMCCGGAGGACGATAATGGATGATCCATTCATCAGAAAACTACATGGAEST: gi|86049784|gb|DR345539.1|DR345539
genomic: TCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAAGgtaaaaagtg ... tggaatgtagAGTAACCGGAGGACGATAATGGATGATCCATTCATCAG-AAACTACATGGA
EST: TCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAAG AGTAACCGGAG-ACGATAATGGATGATCCATTCATCAGAAACTACATGGAA
genomic: TCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAAGgtaaaaagtg ... tggaatgtagAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACTACATGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAAAAACGACCCTGAGATTTTGGCAATGACAAATTTGATCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAAGgtaaaaagtgaagtattattgggttgttttttcaactcattatatatgaaaacgacactcatggaatggtttttggaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA