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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATGCATTTGCTTCTCAGgtatgcggttcttgtcatgcctccacttttctattcctttcatatctttgtttgtttttaagatcccgattctcttgaataaagttctatttactatagttaagagttcctaaagaatcaacacctttgtttttcatagtgggtcttgttttcatgatctctcattacaaacctacatttttacag

Basic information

species Arabidopsis thaliana
transcript AT1G57600.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G41940.1 (Glycine max), 5'ss of exon 9
AAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATGCATTTGCTTCTCAGgtatgcggttcttgtcatgcctccacttttctattcctttcatatctttgtttgtttttaagatcccgattctcttgaataaagttctatttactatagttaagagttcctaaagaatcaacacctttgtttttcatagtgggtcttgttttcatgatctctcattacaaacctacatttttacag
 | ||| | ||   | | |     |||||||||||||||||||||||||||  | ||  ||||||| |||||  | | ||| ||||| ||||| || ||||| || |  |   || |    |     |||  ||   ||     || || ||   ||  |  |         | |||| ||  |||||||| |    |  |||    || |                                                                           
TAATGACAACTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCGGGTCCAATACTGAACTTCAATGCCTTTGCCTCACAGgtttgtgact---gtaagttattttgattttgatggtttaagcttcattattgacttccattaca-------ttttgagta--gttctattga--ggaagtaaaccctcatctt------------------------------------------------------------------------

upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 10
AAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGTATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATGCATTTGCTTCTCAGgtatgcggttcttgtcatgcctccacttttctattcctttcatatctttgtttgtttttaagatcccgattctcttgaataaagttctatttactatagttaagagttcctaaagaatcaacacctttgtttttcatagtgggtcttgttttcatgatctctcattacaaacctacatttttacag
 | ||| |  |   | | |     |||||||||||||||||||||||||||  | ||  |||| || |||||  | | ||| ||||| ||||| || ||||| || |  |  |             | || |  |  |  |   | |  | ||  |||| ||       |||| ||||   ||||      |  | | ||||     |  | || |||  |                                                                 
CAATGACAAGTTTGGATATATCACATACCTTTGTTATTTGGTATATGCACCACTTTATATTGCTGGTCCAATACTGAACTTCAATGCCTTTGCCTCACAGgtttgtgactgcta----------gttattttgattttgacg-gtttaagcttcattttgag----tagttctattgag-gaagtaaaccctcatcttgtta-----ttttcaaaaataga-----------------------------------------------------------------