1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTTGAAGGTTGGGAAGACGATGAAACTCACAACCCGGATATACCTGCCGTCTCACACAAGAGGGGTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAGgtaagtaaactataaattattgtatactcttcccacctataatcttagttacattgatttgatctgaatatcttccttgatgttattag
species | Arabidopsis thaliana |
transcript | AT1G21760.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCGTCTTCGTTCCTTTCGAAGAG GTTGACGAATCGGTTCTGAACTTGCCACCGGAGAAAATGGATTACTATGTCEST: gi|125222846|gb|EL236931.1|EL236931
genomic: TCGTCTTCGTTCCTTTCGAAGAGgtaagtaaac ... atgttattagGTTGACGAATCGGTTCTGAACTTGCCACCGGAGAAAATGGATTACTATGTC
EST: TCGTCTTCGTTCCTTTCGAAGAG GTTGACGAATCGGTTTCTTGAACTTGCCACCGGAGAAAATGGATTACTATGEST: gi|125190377|gb|EL205331.1|EL205331
genomic: TCGTCTTCGTTCCTTTCGAAGAGgtaagtaaac ... atgttattagGTTGACGAATCGG-TTC-TGAACTTGCCACCGGAGAAAATGGATTACTATG
EST: TCTCACACAAGAGGGGTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAG GTTGACGAATCGGEST: gi|124956143|gb|EL031096.1|EL031096
genomic: TCTCACACAAGAGGGGTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAGgtaagtaaac ... atgttattagGTTGACGAATCGG
EST: TTCGTTCTTCGTTCCTTTCGAAGAG GTTGACGAATCGGTTCTGAACTTGCCACCGGAGAAAATGGATTACTATGTCEST: gi|125304823|gb|EL318908.1|EL318908
genomic: TTCG-TCTTCGTTCCTTTCGAAGAGgtaagtaaac ... atgttattagGTTGACGAATCGGTTCTGAACTTGCCACCGGAGAAAATGGATTACTATGTC
EST: TCGTCTTCGTTCCTTTCGAAGAG GTTGACGAATCGGTTCTGAACTTGCCACCGGAGAAAATGGNTTACTATGTCEST: gi|19741372|gb|AU226725.1|AU226725
genomic: TCGTCTTCGTTCCTTTCGAAGAGgtaagtaaac ... atgttattagGTTGACGAATCGGTTCTGAACTTGCCACCGGAGAAAATGGATTACTATGTC
EST: TCTCACACAAGAGGGGTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAG GTTGACGAATCGGTTCTGAACTTTCCACCGGAGAAAATGGATTACTATGTCEST: gi|86076059|gb|DR371816.1|DR371816
genomic: TCTCACACAAGAGGGGTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAGgtaagtaaac ... atgttattagGTTGACGAATCGGTTCTGAACTTGCCACCGGAGAAAATGGATTACTATGTC
EST: TCTCACACAAGAGGGGTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAG GTTGACGAATCGGTTCTGAACTTGCCACCGAAGAAAATGGATTACTATGTC
genomic: TCTCACACAAGAGGGGTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAGgtaagtaaac ... atgttattagGTTGACGAATCGGTTCTGAACTTGCCACCGGAGAAAATGGATTACTATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGAAGGTTGGGAAGACGATGAAACTCACAACCCGGATATACCTGCCGTCTCACACAAGAGGGGTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAGgtaagtaaactataaattattgtatactcttcccacctataatcttagttacattgatttgatctgaatatcttccttgatgttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA