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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTTTTCCATTTTGCTCAACTACGCCAGCTGCCTGTTCTTGTCCCATATATGCCTACGGATAACCCAAGGCTTAAGGATACTGTGTATGAGgtttgtatatatcaacaactttctacagataggcttaaatgaaaatattttatttcatagaaattttaaaatagataagtaaaaaaaaaaacttttcttgtaaacgcaaacatttgtttgaaacagtggaggcataagatttatcttgaagtttatttctttacgatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G08190.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063802|gb|DR359559.1|DR359559
EST:     TCCCATATATGCCTACGGATAACCCAAGGCTTAAGGATACTGTGTATGAG                         GTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTG
genomic: TCCCATATATGCCTACGGATAACCCAAGGCTTAAGGATACTGTGTATGAGgtttgtatat ... tacgatgcagGTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTG
EST: gi|125240901|gb|EL254986.1|EL254986
EST:     AAGGCTTAAGGATACTGTGTATGAG                         GTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTG
genomic: AAGGCTTAAGGATACTGTGTATGAGgtttgtatat ... tacgatgcagGTTGCTCTAGTTGCACTAGCAACCAATCCCTCATACCACAAGGAGCTTTTG