Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCTAACACTGTGAAAAGTGGTAGCCAAGTGGAGAATGCGCCATTGCTGGTGCTTGTGCCGAATAATTGGTTAAGGTTGACATATGCAATCAAGTCTGgttagtgtgatttaattataagggtgttgtttgtatctaacacactttgcacgtattgcagttattcattgaaattcaaacctgttttggacgttttcgt...

Basic information

species Arabidopsis thaliana
transcript AT5G65950.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055505|gb|DR351262.1|DR351262
EST:     GGTGCTTGTGCCGAATAATTGGTTAAGGTTGACATATGCAATCAAGTCTG                         AGCAAAGCGGCAAGCTTGAGTGTCTTTCAGTTCTTGCAAAATTGGGGCCTC
genomic: GGTGCTTGTGCCGAATAATTGGTTAAGGTTGACATATGCAATCAAGTCTGgttagtgtga ... tcatctgcagAGCAAAGCGGCAAGCTTGAGTGTCTTTCAGTTCTTGCAAAATTGGGGCCTC
EST: gi|125050109|gb|EL122378.1|EL122378
EST:     TGACATATGCAATCAAGTCTG                         AGCAAAGCGGCAAGCTTGAGTGTCTTTCAGTTCTTGCAAAATTGGGGCCTC
genomic: TGACATATGCAATCAAGTCTGgttagtgtga ... tcatctgcagAGCAAAGCGGCAAGCTTGAGTGTCTTTCAGTTCTTGCAAAATTGGGGCCTC