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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGCAACTAAATATGGACCAGCGATTGACATGTGGTCAGTTGGATGCATATTTGCTGAACTTTTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAGgtcaggatttcatcttatgattatcgtggtgtgtgttattacagtgttctttgatgatgtttccacttagcgttttagtcatatttttttctttccag

Basic information

species Arabidopsis thaliana
transcript AT5G64960.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64960.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G019267_T02 (Zea mays), 5'ss of exon 7
TGGTGCAACTAAATATGGACCAGCGATTGACATGTGGTCAGTTGGATGCATATTTGCTGAACTTTTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAGgtcaggatttcatcttatgattatcgtggtgtgtg-ttattacagtgttctttgatgatgtttccacttagcgttttag-tcatatttttttctttccag-
|||    || || ||||| |||||  |||||||||||||||| || || || ||||| |||||| | ||||| || ||||| |||||||| || | ||||||     |||    |  |   | |  | || |  | || || |||| ||      | |    ||   | |||     || | |         ||||     
TGGAAGCACAAAGTATGGCCCAGCCGTTGACATGTGGTCAGTGGGCTGTATTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttttcagtctttcgtgtgttagtttacggttttttcagtttttcccattaacaaatctg-tgagcacacaaggttactggggcccctttgtgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059280|gb|DR355037.1|DR355037
EST:     TATTTGCTGAACTTTTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAG                         AATGAACAATTGAATAAGATTTATGAGCTTTGTGGATCACCTGATGAAAGC
genomic: TATTTGCTGAACTTTTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAGgtcaggattt ... ttctttccagAATGAACAATTGAATAAGATTTATGAGCTTTGTGGATCACCTGATGAAAGC
EST: gi|124884820|gb|EH963722.1|EH963722
EST:     GGAAAACCAATCTTGCCTGGGAAAACTGAG                         AATGAACAATTGAATAAGATTTATGAGCTTTGTGGATCACCTGATGAAAGC
genomic: GGAAAACCAATCTTGCCTGGGAAAACTGAGgtcaggattt ... ttctttccagAATGAACAATTGAATAAGATTTATGAGCTTTGTGGATCACCTGATGAAAGC
EST: gi|164227882|gb|ES119663.1|ES119663
EST:     TATTTGCTGAACTTTTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAG                         AATGAACAATTGAATAAGATTTATGAGCTTTGTGGATCACCTGATGAAAGC
genomic: TATTTGCTGAACTTTTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAGgtcaggattt ... ttctttccagAATGAACAATTGAATAAGATTTATGAGCTTTGTGGATCACCTGATGAAAGC
EST: gi|86059279|gb|DR355036.1|DR355036
EST:     TATTTGCTGAACTTTTGAATGGAAAACCAATCTTGCCTGGGAAAGCTGAG                         AATGAACAATAGAATAAGATTTATGAGCTTTGTGGATCACCTGATGAAAGC
genomic: TATTTGCTGAACTTTTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAGgtcaggattt ... ttctttccagAATGAACAATTGAATAAGATTTATGAGCTTTGTGGATCACCTGATGAAAGC