1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGAGACACTCCGTGTTAAAGGACATCCACGGATATTTGCATTAGGTGATTCGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAGCTCAGgtgagaaaaaaggctacaaaatatgaacacattcatgttctataacttaatcagagtgacacggcaatcaaaaatttcag
species | Arabidopsis thaliana |
transcript | AT5G08740.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAGCTCAGG GTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATATGGGCAGCTATEST: gi|124902239|gb|EH976319.1|EH976319
genomic: CGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAGCTCA-Ggtgagaaaaa ... aaaatttcagGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATATGGGCAGCTAT
EST: CGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAGCTCAG GTTGCTTTTCAAGAAGCAGAEST: gi|124710611|gb|EH802013.1|EH802013
genomic: CGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAGCTCAGgtgagaaaaa ... aaaatttcagGTTGCTTTTCAAGAAGCAGA
EST: CAAACGGAAAGATTCTTCCTACAACAGCTCAG GTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATATGGGCAGCTATA
genomic: CAAACGGAAAGATTCTTCCTACAACAGCTCAGgtgagaaaaa ... aaaatttcagGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATATGGGCAGCTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGACACTCCGTGTTAAAGGACATCCACGGATATTTGCATTAGGTGATTCGTCTTCTCTAAGAGACTCAAACGGAAAGATTCTTCCTACAACAGCTCAGgtgagaaaaaaggctacaaaatatgaacacattcatgttctataacttaatcagagtgacacggcaatcaaaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA