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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAATCAAGTCTGCAATTTTAAACGGGGAATTGCCTCAGAATTCTCGACTTCATATCCTTGAGgtacatcaccaagtcatgcacctagatttagtttttccggaagcagctgcgtttcataattaatcagtgtatatttttttgtatacag

Basic information

species Arabidopsis thaliana
transcript AT4G34910.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34910.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv00s0525g00010.t01 (Vitis vinifera), 5'ss of exon 1
-------------------TTTGGAATCAAGTCTGCAATTTTAAACGGGGAATTGCCTCAGAATTCTCGACTTCATATCCTTGAGgtacatcaccaagtcatgcacctagatttagttttt--ccggaagcagctgcgtt-tcataattaatcagtgtatattt----ttttgtatacag-----
                   |||||||||||||||||  ||||||| |  || ||||| || ||||| || || |||||||||||||||   || | |   |  |   |   || || |  |  |    |  |  |      ||||  ||  |   | |    |     |||  |  | ||     
TCCATGTTATCTGTGGCAGTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAGgtatgccatccaactagtcctattatttaagatactagcaaagaataattttaacgtcatgcttgctttttcttggctgccagtttaattaatagagtat

upper sequence: AT4G34910.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv00s0441g00010.t01 (Vitis vinifera), 5'ss of exon 7
TTTGGAATCAAGTCTGCAATTTTAAACGGGGAATTGCCTCAGAATTCTCGACTTCATATCCTTGAGgtacatca-ccaagtcatgcacctagatttagtttttccg--gaagcagctgcgtttcataattaatcagtgtatattt----ttttgtatacag----------------------------------------------------------------------------------------------
|||||||||||||||||  ||||||| |  || ||||| || ||||| || || |||||||||||||||   |  |||| |  | ||  ||  |    |  |  |   |||  |  |   | ||||  ||  |   | |          |||     | ||                                                                                              
TTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAGgtatgccgtccaactagtccaattatttaagatactagcaaagaataattttaatgtcatgcttgctttttcttggccgccggtttaactaatagagtatgttaattgtagtaatgggttaataattacctaatcactaaacaaattcgggaattccttattttttatgtggttactgctttttatcag