Sequence
atgc intronic sequence ATGC exonic sequenceGTTACCTTGGGATGTGAAAGGACATACAAAGCAGAAAATCCATTTGACTGGATGGAGTTCATATCTCTGCAgtaagtagtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacatatcaagaacagtagtgtatcttcattgactaagttggttttggtacttttatgacaaatttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G23580.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G23580.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv05s0020g02560.t01 (Vitis vinifera), 5'ss of exon 8
GTTACCTTGGGATGTGAAAGGACATACAAAGCAGAAAATCCATTTGACTGGATGGAGTTCATATCTCTGCAgtaagtagtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacata-tcaagaacagtagtgtatcttcattgactaagttggttttggtacttttatgacaaatttgcag
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GTTGCCCTTGGGTATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGGATGGAGTTTATTTCTTTGCAgtgagta-----------ttgatgagtg-----catgtcttggattctgattttatgttgttgaactctattaaaatgctatttatttcagaaacatgtacatctgggaggtcttg--------------
upper sequence: AT3G23580.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv00s0426g00030.t01 (Vitis vinifera), 5'ss of exon 2
GTTACCTTGGGATGTGAAAGGACATACAAAGCAGAAAATCCATTTGACTGGATGGAGTTCATATCTCTGCAgtaagtagtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacatatcaagaacagtagtgtatcttcattgactaagttggttttggtacttttatgacaaatttgcag
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GTTGCCATTGGATATGAGAGGAAATACAACGTGGAAAATCCATTTGATTGGATGGAGTTTATTTCTTTGCAgtgagta-ttgatgag------tgcatgtcttggat-tctagttttatgttgttgaactc---tattaaaa----tgctatttatttcagaaacatgtacatttgagaggtcttg--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124910988|gb|EH985068.1|EH985068EST: ACATACAAAGCAGAAAATCCATTTGACTGGATGGAGTTCATATCTCTGCA AGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGA
genomic: ACATACAAAGCAGAAAATCCATTTGACTGGATGGAGTTCATATCTCTGCAgtaagtagtc ... aaatttgcagAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTACCTTGGGATGTGAAAGGACATACAAAGCAGAAAATCCATTTGACTGGATGGAGTTCATATCTCTGCAgtaagtagtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacatatcaagaacagtagtgtatcttcattgactaagttggttttggtacttttatgacaaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA