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CACTACAGAGGCCATGTCAGTGAATCGTGCATTTCGAGCAATTCGTCGTTCTGATGTTGTTGCCCTTGTCATTGAAGCTATGGCATGCATAACAGAGCAGgtatctcactagtaactgacactgatgactgtttctcattagcaattgtagagcatgcagactgttttggtatagacagagttgaaccatacagtataat...
species | Arabidopsis thaliana |
transcript | AT3G12080.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGATGTTGTTGCCCTTGTCATTGAAGCTATGGCATGCATAACAGAGCAG GATCTGAAGATTGTAGAAAGAEST: gi|164234420|gb|ES091853.1|ES091853
genomic: CTGATGTTGTTGCCCTTGTCATTGAAGCTATGGCATGCATAACAGAGCAGgtatctcact ... ggaaacacagGATCTGAAGATTGCAGAAAGA
EST: GGCATGCATAACAGAGCAG GATCTGAAGATTGCAGAAAGAATAGAAAGAGAAGGGAAAGGATGTCTGGTTEST: gi|125008441|gb|EL080710.1|EL080710
genomic: GGCATGCATAACAGAGCAGgtatctcact ... ggaaacacagGATCTGAAGATTGCAGAAAGAATAGAAAGAGAAGGGAAAGGATGTCTGGTT
EST: TGCATAACAGAGCAG GATCTGAAGATTGCAGAAAGAATAGAAAGAGAAGGGAAAGGATGTCTGGTT
genomic: TGCATAACAGAGCAGgtatctcact ... ggaaacacagGATCTGAAGATTGCAGAAAGAATAGAAAGAGAAGGGAAAGGATGTCTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTACAGAGGCCATGTCAGTGAATCGTGCATTTCGAGCAATTCGTCGTTCTGATGTTGTTGCCCTTGTCATTGAAGCTATGGCATGCATAACAGAGCAGgtatctcactagtaactgacactgatgactgtttctcattagcaattgtagagcatgcagactgttttggtatagacagagttgaaccatacagtataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG