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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCCATTGTCAGAGAAGAACTATTTTCCTCAGCTTACAGTTCTCTCAGTAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaacataaacactacttgcaattttcgcttgaagagaacttctgtgtctaataaagttttttgatattctcag

Basic information

species Arabidopsis thaliana
transcript AT2G44530.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G44530.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g03540.1 (Oryza sativa), 5'ss of exon 8
GATTCCATTGTCAGAGAAGAACTATTTTCCTCAGCTTACAGTTCTCTCAGTAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaacataaacactacttgc-aattttcgcttgaagagaacttctgtgtctaataaagttttttgatattctcag-----------------------
 || ||  |    ||| | ||   ||| || ||||| ||  | || ||||| || |||||| | || ||||| || ||||||||||||||||||||||| |||||||  |  ||   || |||||| | || || |   ||     ||  | | | |  || |    |||| |  |  ||                        
TATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGCGTGTTCATGATGATTGCTCAgtgagtactaagtagcaacaacttgccagttatcacgcaaactctgctcttttatgtgctaga----tttggtgcttccaattaattacacacctcatgtctta

upper sequence: AT2G44530.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA03G24280.1 (Glycine max), 5'ss of exon 8
GATTCCATTGTCAGAGAAGAACTATTTTCCTCAGCTTACAGTTCTCTCAGTAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaacat----aaacactacttgcaatt--ttcgcttgaagagaacttctgtgtctaataaagtttt--ttgatattctcag------------
 |||||| || ||||  |||||||||| |||||  | || ||  | || || ||||||||||| || |||||  | ||||||||||||||||||||||| |||||||  | ||      | | ||  |  | ||  ||   ||  |   |   | |      ||  ||       |  ||| |||               
AATTCCAGTGGCAGAACAGAACTATTTCCCTCAATTAACTGTCTTGTCGGTGGCAAACCTTCTGGGCGAGACTGTTTGGCGTGTTCATGATGATTGCTCAgtgagtagcatatttctgtagaataagtttagttagttatttttcattcatgatatagagaaaacgaaaccacactcaatactcttgcacatgcatgctt

upper sequence: AT2G44530.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G12660.1 (Glycine max), 5'ss of exon 8
GATTCCATTGTCAGAGAAGAACTATTTTCCTCAGCTTACAGTTCTCTCAGTAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaacataaacactacttgcaattttcgcttgaagagaacttctgtgtctaataaagt-------tttttgatattctcag---------------
 |||||| || ||||  |||||||||| || ||  | || || || || || ||||||||| | || |||||  | ||||||||||||||||||||||| |||||||  | ||       |  |  |||||| | |||       | |   ||    | ||| |          |  ||| |||                  
AATTCCAGTGGCAGAACAGAACTATTTCCCCCAATTAACTGTCCTGTCGGTGGCAAACCTTTTGGGCGAGACTGTTTGGCGTGTTCATGATGATTGCTCAgtgagtagcatatttctgtaaaat--aattttagtttgttagtctcattcatgatagagaaaatgagaccaccctcaatactcttgcacatgcatgctggcg

upper sequence: AT2G44530.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 8
GATTCCATTGTCAGAGAAGAACTATTTTCCTCAGCTTACAGTTCTCTCAGTAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaac------ataaac--actacttgcaattttcgcttgaagaga------acttctgtgtctaataaagttttttgatattctcag------
 |||||| |||  ||| | ||||||||||| ||||| ||||| || |||||||||||||| || |||||||| |||||||||||||||||||| ||||| |||||||  |        |||||    |   ||  |   ||     || ||       | || |||  ||   |  |  ||||| |||  | |       
CATTCCAGTGTTGGAGCAAAACTATTTTCCACAGCTGACAGTCCTGTCAGTAGCAAACCTCCTGGGGGAGACTATATGGCGTGTTCATGATGACTGCTCAgtgagtagtatttttcagtaaactggtttaatgagagaatcaacaaaaaagttggttcatttttgttacttgcatggggttttggtatgttgaagttgtc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164127894|gb|EL978478.1|EL978478
EST:     GACCATATGGCGTGTTCATGATGATTGCTCG                         GGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAA-
genomic: GACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaa ... atattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA
EST: gi|86075310|gb|DR371067.1|DR371067
EST:     TAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCG                         GGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA
genomic: TAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaa ... atattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA
EST: gi|86075718|gb|DR371475.1|DR371475
EST:     TAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCG                         GGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA
genomic: TAGCAAACCTTCTTGGGGAGACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaa ... atattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA
EST: gi|164151383|gb|EL999687.1|EL999687
EST:     GACCATATGGCGTGTTCATGATGATTGCTCG                         GGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAA-
genomic: GACCATATGGCGTGTTCATGATGATTGCTCGgtgagtaaaa ... atattctcagGGAGCCATTGAGCCATTTTCGACGTTGGGGATTGATTGAGTGATGGAAAAA