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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTAACCGAAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTTGTTGAGTTAGGCGCGTGTGTTTTGGTTATATTTTCTCTTGTTGgtaagtaagtggcactgcttatttatcttcaagtttcaagttctctatttcataattttttttttgaatgtaactctatttcataatttacatgacctct...

Basic information

species Arabidopsis thaliana
transcript AT2G27810.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 8
ACTCTAACCGAAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTTGTTGAGTTAGGCGCGTGTGTTTTGGTTATATTTTCTCTTGTTGgtaagtaagtggcactgcttatttatcttcaagtttcaagttctctattt-cataattttttttttgaatg--taactctatttcataatttacatgacctct
||| |||| ||||| ||||||||||| |||||||| ||||||||||||||||| |  ||| |  | || || ||  || || |  | || |||||| | |||||||   ||    |   | | | |  |    | | |  |||  ||      || || || |    ||||  | |||    |  | |    |  ||   | |
ACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTATAGgtaagtgtctg---ttatctttctgttcttggatctaaccttcattagaagtgtacttattatgaacaatgagttactgggatgaaaagccaatttgggttgt

upper sequence: AT2G27810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA11G19420.1 (Glycine max), 5'ss of exon 8
ACTCTAACCGAAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTTGTTGAGTTAGGCGCGTGTGTTTTGGTTATATTTTCTCTTGTTGgtaagtaagtggcactgcttatttatcttcaagtttcaagttctctattt-cataattttttttttgaatg--taactctatttcataatttacatgacctct
||| |||| ||||| ||||||||||| |||||||| ||||||||||||||||  |  ||| |  | || || ||  || || |  | || || ||||| |||||||   |   | |   | | |    |    | | |  |||  ||     ||| || || |    ||||  | |||       | |    |  ||   | |
ACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAAGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTATCGCTTGTAGgtaagtgttt---attatctttctgctcttggatctaaccttcattagaggtatacttattatgaacaatgagtgactgggaggaaaagccaatttgggttgt

upper sequence: AT2G27810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G05280.1 (Glycine max), 5'ss of exon 8
ACTCTAACCGAAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTTGTTGAGTTAGGCGCGTGTGTTTTGGTTATATTTTCTCTTGTTGgtaagta---agtggcactgcttatttatcttcaagtttcaagttctctatttcataattttttttttgaatgtaactctatttcataatttacatgacctct
||  |||||||||| ||||| ||||| ||||| || |||||||||||||||||||   || | || || || ||  || || || | || ||||| || |||||||    |||| |  |  ||  ||   |  |  |||     ||| | ||        |      || |   || |  ||||  ||  | | |  |  |  
ACCTTAACCGAAAATGTTCATACAATTGCTGTCACTAAAATGGGAAGCCGCAGAGCAATTCAATTGGGTGCATGCTTTCTGATTGTGTTGTCTCTCGTGGgtaagtgtctagtgtctttcttttcttgcatctacctttatcagtctatcttgtgatgaatagccactggacagaagtacatttatta--tgagactattta-

upper sequence: AT2G27810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA12G30670.1 (Glycine max), 5'ss of exon 8
ACTCTAACCGAAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTTGTTGAGTTAGGCGCGTGTGTTTTGGTTATATTTTCTCTTGTTGgtaagta---agtggcactgcttatttatcttcaagtttcaagttctctatttcataattttttttttgaatgtaactctatttcataatttacatgacctct--
||  |||| ||||| ||||| ||||| ||||| || |||||||||||||||||||  ||| | || || || ||  || || || | || ||||| || |||||||    |||| |  |   |  ||   |  |  |||      || | ||        |      || |   || |  ||||      ||||  ||| | |  
ACCTTAACTGAAAATGTTCATACAATTGCTGTCACTAAAATGGGAAGCCGCAGAGCAGTTCAATTGGGTGCATGCTTTCTGATTGTGTTGTCTCTCGTGGgtaagtgtctagtgtctttctcttcttgcatctacctttatcagcctatcttgtgatgaatagccgctggacagaagtacattta-----ttacgagacttttca

upper sequence: AT2G27810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 8
ACTCTAACCGAAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTTGTTGAGTTAGGCGCGTGTGTTTTGGTTATATTTTCTCTTGTTGgtaagtaagtggcactgcttatttatcttcaagtttcaagttctctatttcataattttttttttgaatgtaactctatttcataatttacatgacctct---
|||||||| ||||| || ||||| || |||||||| ||||||||||||||||| |  |||||||| || || || |||||| |     | || ||||| |||||||   |   |      |  ||| ||||  ||  |          |  | ||| ||   | |  |  ||  |    ||  |  | | |||||        
ACTCTAACTGAAAATGTGCACACTATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTGAGTTTGGTGCATGCGTTTTGATAGCGCTATCCCTTGTAGgtaagtgttt---ataaagcacctattttcatattctattgatgagcatataaaatattaaatatagaaatattttggcttttttttgttcatgaagggcagg