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TTGTAAGACTTATGGGTCGTGCTGCTTCCCACATTACGCTTGAGTGTGCTTTACAAACTCACCCAAACATAACCATTATTGGAGAAGAGgtaacgtttttggttgacttcaattcaaattaccgtaaagatatctgaatcttaatcgtgtagatgatagaattagactgcaaatcagattcatatttgt...
species | Arabidopsis thaliana |
transcript | AT1G12000.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGAGTGTGCTTTACAAACTCACCCAAACATAACCATTATTGGAGAAGAG GTTTCTGCCCAGEST: gi|125169438|gb|EL193475.1|EL193475
genomic: TTGAGTGTGCTTTACAAACTCACCCAAACATAACCATTATTGGAGAAGAGgtaacgtttt ... ttttttgcagGTTTCTGCCCAG
EST: TTGAGTGTGCTTTACAAACTCACCCAAACATAACCATTATTGGAGAAGAG GTTTCTGCCCAGAAGCAGACTTTGAAGAAEST: gi|116438054|gb|EG480646.1|EG480646
genomic: TTGAGTGTGCTTTACAAACTCACCCAAACATAACCATTATTGGAGAAGAGgtaacgtttt ... ttttttgcagGTTTCTGCCCAGAAGCAGACTTTGAAGAA
EST: TTGAGTGTGCTTTACAAACTCACCCAAACATAACCATTATTGGAGAAGAG GTTTCTGCCCAGAAGCAGACTTTGAAGAATGTCACAGACTACATGGTGGAT
genomic: TTGAGTGTGCTTTACAAACTCACCCAAACATAACCATTATTGGAGAAGAGgtaacgtttt ... ttttttgcagGTTTCTGCCCAGAAGCAGACTTTGAAGAATGTCACAGACTACATGGTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTAAGACTTATGGGTCGTGCTGCTTCCCACATTACGCTTGAGTGTGCTTTACAAACTCACCCAAACATAACCATTATTGGAGAAGAGgtaacgtttttggttgacttcaattcaaattaccgtaaagatatctgaatcttaatcgtgtagatgatagaattagactgcaaatcagattcatatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcaga