1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GATTGGTGCCATGTGTGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAATCTCCAAGATGGCTGgtaagtttttatttatttaaatatttgcaaatatagtattggtttctatgattataaccaatcaaaagccggtaaatattttgaaacttggttcaagcatttgtaaatatttgttggtgcttcttcatatatactgttatatatgacag
species | Arabidopsis thaliana |
transcript | AT1G08930.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAATCTCCAAGATGGCTG GCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCCTTAGGEST: gi|125219093|gb|EL233178.1|EL233178
genomic: TGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAATCTCCAAGATGGCTGgtaagttttt ... tatatgacagGCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCCTTAGG
EST: GTTCCACGTCTTTTGTTTATTTTTCTATCCCCGAATCTCCAAGATGGCTG GCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCCTTAGGEST: gi|124939884|gb|EL016389.1|EL016389
genomic: GTTCCACGTCTTTTGTTTATTTTTC-ATCCCCGAATCTCCAAGATGGCTGgtaagttttt ... tatatgacagGCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCCTTAGG
EST: ATCCCCGAATCTCCAAGATGGCTG GCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCCTTAGGEST: gi|125012494|gb|EL084763.1|EL084763
genomic: ATCCCCGAATCTCCAAGATGGCTGgtaagttttt ... tatatgacagGCGAAGTTAGGTCGTGATAAAGAATGCCGATCTTCGTTGCAACGCCTTAGG
EST: ATCCCCGAATCTCCAAGATGGCTG GCGAAGTTAGGTCGTGATAAAGAATGCCGATCT
genomic: ATCCCCGAATCTCCAAGATGGCTGgtaagttttt ... tatatgacagGCGAAGTTAGGTCGTGATAAAGAATGCCGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGGTGCCATGTGTGTTCCACGTCTTTTGTTTATTTTTCATCCCCGAATCTCCAAGATGGCTGgtaagtttttatttatttaaatatttgcaaatatagtattggtttctatgattataaccaatcaaaagccggtaaatattttgaaacttggttcaagcatttgtaaatatttgttggtgcttcttcatatatactgttatatatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG