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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGATTATGAAAATTTTGGAGCATCCTAACATCGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGgtacttaatctcctttctcttttctactgttttgatatatactctctgtggaaagagcctttaatcttataatgcctgtctttctggcttctcctag

Basic information

species Arabidopsis thaliana
transcript AT5G60550.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 7
GTTATGATTATGAAAATTTTGGAGCATCCTAACATCGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGgtact--taatctcctttctcttttctactgttttgatatatactctc-tgtggaaagagcctttaatcttataatgcctgtctttctggcttctcctag----
||| | |||||||||||  |||| |||||||| || || || |||||||||||||| |||||||| || || ||  | || |||||||||| |  | |     ||  ||||   |  | | |  || |    |    ||  |||  |  | ||     |   | || || ||  |||  || || |      
GTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGACGGACAACTTCTACATGGgtattgatgactagtttcttcttggtttatatctgtatttgagtttaaatgaagaagaatacctttgaggtcccacgcttgactg-ctgatttttcttgtacag

upper sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G40190.1 (Glycine max), 5'ss of exon 7
GTTATGATTATGAAAATTTTGGAGCATCCTAACATCGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGgtacttaat-ctcctttctcttttctactgtttt-----gatatatactctctgtggaaagagcctttaatcttataatgcctgtctttctg-gcttctcctag-------------------------------------
||  |||||||||||||  |||| |||||||| || || || |||||||||||||| ||||| || ||  | ||| | || |||||||||||| ||| ||  || ||  ||  |  |||| |     |||   | ||| ||||     |  | | |    ||      |  |  |   |  |  ||||| |                                      
GTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGgtactcaatgctagttgcttcttggttttgttatatagcgatgactgctc-ctgtaatttgtacatatgtatttgagcctcgagcttaattaagaatctccaataagttctatgcttaactgctgttgtttacttttacag

upper sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G29640.4 (Glycine max), 5'ss of exon 5
GTTATGATTATGAAAATTTTGGAGCATCCTAACATCGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGgtacttaat-ctcctttctcttttctactgttttgatat-atactctctgtggaaagagcctttaatcttataatgcctgtctttctggcttctcctag-------------------------------------
||  |||||||||||||  |||| |||||||| || || || |||||||||||||| ||||| || ||  | ||| | || |||||||||||  ||| ||  |||||   || |  | ||| |  || | |    ||||     |  | | |  | | |   |     |   |   |  ||||| |                                      
GTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGgtacccaatgctagtttcttggttttgttatttagtgatgacagctcctgtaatttgtacatatgttttgagcctcaagtttaattaagaatctccaataagttctatgattaactgccgttgtttacttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124986610|gb|EL059119.1|EL059119
EST:     TAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGG                         TTCTTGAATACGTTG
genomic: TAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGgtacttaatc ... cttctcctagTTCTTGAATACGTTG
EST: gi|164194934|gb|ES209970.1|ES209970
EST:     AACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTTACATGG                         TTCTTGAATACGTTGATGGAAAATGGGTAGTATGACGGTTC
genomic: AACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTT-ACATGGgtacttaatc ... cttctcctagTTCTTGAATACGTTGATGGAAAATGGGT-GTATGACGGTTC