1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCAGACTTCTTAAATGCCAGAATTAATGGCCTGCCTGTGAAGGAGGTTATTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggcgattcctctgataatgaaatgatttctgcaatgagatataatgttttgctgagtaagtttgcgttttgttttacag
species | Arabidopsis thaliana |
transcript | AT5G58330.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGGGATTCACTGAGAGTGTGCAGAAG AGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACTEST: gi|86080979|gb|DR376736.1|DR376736
genomic: AGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
EST: TTAGAAGAGGGATTCACTGAGAGTGTGCAGAAG AGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACTEST: gi|86081501|gb|DR377258.1|DR377258
genomic: TTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
EST: GATTCACTGAGAGTGTGCAGAAG AGAGGTGGGTTATTAATYCAGAAATGGGGTCGATCTTCTGCTGCTTCTACTEST: gi|116454058|gb|EG496650.1|EG496650
genomic: GATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
EST: TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAG AGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACTEST: gi|125295265|gb|EL309350.1|EL309350
genomic: TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
EST: TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAG AGAGGTGGGTTATTAATTCAGAAATEST: gi|116454053|gb|EG496645.1|EG496645
genomic: TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAAT
EST: TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAG AGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
genomic: TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAGACTTCTTAAATGCCAGAATTAATGGCCTGCCTGTGAAGGAGGTTATTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggcgattcctctgataatgaaatgatttctgcaatgagatataatgttttgctgagtaagtttgcgttttgttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG