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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTTGGAACCGTGACAATATCGAGAACGTGCAGgtgagagctgcatagctaagacagaaatagtcagactgtttgttatttagagtcaattcacattttcaaatgcttttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G40760.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 5'ss of exon 7
TTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTTGGAACCGTGACAATATCGAGAACGTGCAGgtgaga-gctgcatagctaagac--agaaatagtcagactgtttgttat--ttagagtcaattcacattttcaaa-tgcttttcttgcag----------
 | || || || ||||| || ||||| |||||||| |||||||||||||||||||| || ||  | ||||| ||  | |  |||| |   ||  || | ||| ||   | |  |||||  ||  ||       || |||  ||| |||  ||  ||||           
CTTGTGCTTCGTTTTGCCAACCGCTTGTTCTTGCCTCTTTGGAACCGTGACAATATTGATAATATACAGgtaagctggtcaatagttggtacttagcagtaggcaacttataggttatgattcaagaagtccaacttttataaactgcagttaatgcatcatgtagaag

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 7
TTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTTGGAACCGTGACAATATCGAGAACGTGCAGgtgagagctgc--atagctaagacagaaatagtcagactgtttgttatttagagtcaattcacattttcaaatgcttttcttgcag-------------------
||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||||||||   |    || |  ||      ||   |  |  |    |||| ||| | |  ||| |    ||||| ||   ||   | ||                   
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAGgtgaggatttttaattgtcaaagttacaact-ttgggttaaaagttacttaaacttcattta----ttcaattgaaattagggaaggtattgttggttaagcttt

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 7
TTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTTGGAACCGTGACAATATCGAGAACGTGCAGgtgagagctgc--atagctaagacagaaatagtcagactgtttgttatttagagtcaattcacattttcaaatgcttttcttgcag-------------------
||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || || || |||||||||  |    || |  ||     |||   |  |  |    |||| ||| | |  ||| |    || |||||   |    | ||                   
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaatttttaattgtcaaagttaaaact-ttgggttaagagttacttaaacttcattta----tttaaatgaagtaagggaaggcactgttggttgagcttt

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ21593 (Selaginella moellendorffii), 5'ss of exon 6
TTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTTGGAACCGTGACAATATCGAGAACGTGCAGgtgagagctgcatagctaagacagaaatagtcagactgtttgttatttagagtcaattcacattttcaaatgcttttcttgcag
 | ||  | ||||||||||||||||||||  | ||||||||||| ||||| ||| | |  ||||| |||||  | |   ||  |  ||  ||    ||||     | |   |    || |  ||                             
CTTGTGATGCGGTTTGCAAATCGCTTTTTTGTTCCACTTTGGAATCGTGATAATGTTGCAAACGTCCAGgtatgggtgacaatgacaaatcatcgctagt---gttctaaatagcatacatgcag----------------------------

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ23968 (Selaginella moellendorffii), 5'ss of exon 6
TTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTTGGAACCGTGACAATATCGAGAACGTGCAGgtgagagctgcatagctaagacagaaatagtcagactgtttgttatttagagtcaattcacattttcaaatgcttttcttgcag
 | ||  | ||||||||||||||||||||  | ||||||||||| ||||| ||||| |  ||||| |||||  | |   ||  |  ||  ||    ||||     | |   |    || |  ||                             
CTTGTGATGCGGTTTGCAAATCGCTTTTTTGTTCCACTTTGGAATCGTGATAATATTGCAAACGTCCAGgtatgggtgacaatgacaaatcatcgctagt---gttctaaatagcatacatgcag----------------------------